Hb_002473_140

Information

Type -
Description -
Location Contig2473: 188860-198940
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002473_140 0.0 - - -
2 Hb_088410_010 0.0882118029 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_159938_010 0.1261930341 - - phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_002869_070 0.1297015581 - - -
5 Hb_050334_010 0.1448406047 - - -
6 Hb_001519_210 0.171654535 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
7 Hb_154997_010 0.1803300839 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
8 Hb_006933_010 0.1827322956 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_099723_010 0.1845282543 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
10 Hb_000940_190 0.1845817896 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
11 Hb_065943_010 0.1854292525 - - -
12 Hb_006157_050 0.1867952146 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_142570_010 0.1893831429 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
14 Hb_032531_010 0.1896157313 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004124_010 0.1998277578 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
16 Hb_043792_020 0.1998596524 - - Retrotransposon gag protein [Medicago truncatula]
17 Hb_106815_010 0.2058337023 - - hypothetical protein, conserved [Eimeria acervulina]
18 Hb_002122_020 0.2162820629 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
19 Hb_004212_040 0.2278036215 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_171685_030 0.2314228818 - - URF-1 [Citrullus lanatus]

Gene co-expression network

sample Hb_002473_140 Hb_002473_140 Hb_088410_010 Hb_088410_010 Hb_002473_140--Hb_088410_010 Hb_159938_010 Hb_159938_010 Hb_002473_140--Hb_159938_010 Hb_002869_070 Hb_002869_070 Hb_002473_140--Hb_002869_070 Hb_050334_010 Hb_050334_010 Hb_002473_140--Hb_050334_010 Hb_001519_210 Hb_001519_210 Hb_002473_140--Hb_001519_210 Hb_154997_010 Hb_154997_010 Hb_002473_140--Hb_154997_010 Hb_088410_010--Hb_159938_010 Hb_002122_020 Hb_002122_020 Hb_088410_010--Hb_002122_020 Hb_088410_010--Hb_002869_070 Hb_088410_010--Hb_050334_010 Hb_142570_010 Hb_142570_010 Hb_088410_010--Hb_142570_010 Hb_043792_020 Hb_043792_020 Hb_159938_010--Hb_043792_020 Hb_159938_010--Hb_154997_010 Hb_159938_010--Hb_002869_070 Hb_159938_010--Hb_001519_210 Hb_002869_070--Hb_050334_010 Hb_006933_010 Hb_006933_010 Hb_002869_070--Hb_006933_010 Hb_002869_070--Hb_154997_010 Hb_004124_010 Hb_004124_010 Hb_002869_070--Hb_004124_010 Hb_006157_050 Hb_006157_050 Hb_002869_070--Hb_006157_050 Hb_032531_010 Hb_032531_010 Hb_050334_010--Hb_032531_010 Hb_050334_010--Hb_001519_210 Hb_000940_190 Hb_000940_190 Hb_050334_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_050334_010--Hb_099723_010 Hb_065943_010 Hb_065943_010 Hb_050334_010--Hb_065943_010 Hb_001519_210--Hb_043792_020 Hb_012295_020 Hb_012295_020 Hb_001519_210--Hb_012295_020 Hb_001519_210--Hb_032531_010 Hb_012071_010 Hb_012071_010 Hb_001519_210--Hb_012071_010 Hb_001519_210--Hb_002869_070 Hb_154997_010--Hb_006933_010 Hb_002495_050 Hb_002495_050 Hb_154997_010--Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_154997_010--Hb_001124_170 Hb_154997_010--Hb_004124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0105667 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0907049 0.0385099 0.202012

CAGE analysis