Hb_002495_050

Information

Type -
Description -
Location Contig2495: 64841-69503
Sequence    

Annotation

kegg
ID brp:103833563
description putative ribonuclease H protein At1g65750
nr
ID XP_012078525.1
description PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID Q9LNS0
description F1L3.4 OS=Arabidopsis thaliana PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002495_050 0.0 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
2 Hb_001124_170 0.0024726215 - - putative retrotransposon protein [Phyllostachys edulis]
3 Hb_006933_010 0.088035048 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_154997_010 0.0939539903 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
5 Hb_021374_020 0.098631893 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
6 Hb_004124_010 0.1164174149 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_170973_010 0.1516282529 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
8 Hb_009268_030 0.1516919008 - - ribosomal protein S7 [Piper cenocladum]
9 Hb_097433_030 0.1793023517 - - hypothetical protein CISIN_1g0017192mg, partial [Citrus sinensis]
10 Hb_143004_010 0.1799138147 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
11 Hb_002869_070 0.1928683073 - - -
12 Hb_159938_010 0.196880622 - - phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_171685_030 0.1972671021 - - URF-1 [Citrullus lanatus]
14 Hb_104735_010 0.201533014 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
15 Hb_141425_010 0.202778702 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
16 Hb_000987_110 0.2042133613 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
17 Hb_123396_010 0.208013273 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
18 Hb_027357_010 0.2226201773 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_102602_030 0.223023702 - - hypothetical protein (mitochondrion) [Vicia faba]
20 Hb_000614_270 0.2261122485 - - -

Gene co-expression network

sample Hb_002495_050 Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_002495_050--Hb_001124_170 Hb_006933_010 Hb_006933_010 Hb_002495_050--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_002495_050--Hb_154997_010 Hb_021374_020 Hb_021374_020 Hb_002495_050--Hb_021374_020 Hb_004124_010 Hb_004124_010 Hb_002495_050--Hb_004124_010 Hb_170973_010 Hb_170973_010 Hb_002495_050--Hb_170973_010 Hb_001124_170--Hb_006933_010 Hb_001124_170--Hb_154997_010 Hb_001124_170--Hb_021374_020 Hb_001124_170--Hb_004124_010 Hb_001124_170--Hb_170973_010 Hb_006933_010--Hb_004124_010 Hb_006933_010--Hb_154997_010 Hb_002869_070 Hb_002869_070 Hb_006933_010--Hb_002869_070 Hb_006933_010--Hb_170973_010 Hb_154997_010--Hb_002869_070 Hb_154997_010--Hb_004124_010 Hb_159938_010 Hb_159938_010 Hb_154997_010--Hb_159938_010 Hb_097433_030 Hb_097433_030 Hb_021374_020--Hb_097433_030 Hb_143004_010 Hb_143004_010 Hb_021374_020--Hb_143004_010 Hb_104735_010 Hb_104735_010 Hb_021374_020--Hb_104735_010 Hb_013420_020 Hb_013420_020 Hb_021374_020--Hb_013420_020 Hb_009268_030 Hb_009268_030 Hb_004124_010--Hb_009268_030 Hb_004124_010--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_004124_010--Hb_141425_010 Hb_170973_010--Hb_009268_030 Hb_170973_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_170973_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_170973_010--Hb_123396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0504224 0.010759 0.280646

CAGE analysis