Hb_006933_010

Information

Type -
Description -
Location Contig6933: 20246-25491
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006933_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_004124_010 0.0526476225 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_154997_010 0.0737813157 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
4 Hb_002495_050 0.088035048 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
5 Hb_001124_170 0.0892301693 - - putative retrotransposon protein [Phyllostachys edulis]
6 Hb_002869_070 0.1109103441 - - -
7 Hb_170973_010 0.1516976833 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
8 Hb_009268_030 0.1516982073 - - ribosomal protein S7 [Piper cenocladum]
9 Hb_106815_010 0.1631054838 - - hypothetical protein, conserved [Eimeria acervulina]
10 Hb_141425_010 0.1695353423 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
11 Hb_000987_110 0.1703667553 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
12 Hb_123396_010 0.1726271577 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
13 Hb_159938_010 0.1761048897 - - phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_002473_140 0.1827322956 - - -
15 Hb_021374_020 0.1852993264 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
16 Hb_171685_030 0.1953694763 - - URF-1 [Citrullus lanatus]
17 Hb_050334_010 0.2051014965 - - -
18 Hb_005742_010 0.2212255851 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_043792_020 0.2225369691 - - Retrotransposon gag protein [Medicago truncatula]
20 Hb_006157_050 0.2229742352 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_006933_010 Hb_006933_010 Hb_004124_010 Hb_004124_010 Hb_006933_010--Hb_004124_010 Hb_154997_010 Hb_154997_010 Hb_006933_010--Hb_154997_010 Hb_002495_050 Hb_002495_050 Hb_006933_010--Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_006933_010--Hb_001124_170 Hb_002869_070 Hb_002869_070 Hb_006933_010--Hb_002869_070 Hb_170973_010 Hb_170973_010 Hb_006933_010--Hb_170973_010 Hb_004124_010--Hb_002495_050 Hb_004124_010--Hb_001124_170 Hb_009268_030 Hb_009268_030 Hb_004124_010--Hb_009268_030 Hb_004124_010--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_004124_010--Hb_141425_010 Hb_154997_010--Hb_002495_050 Hb_154997_010--Hb_001124_170 Hb_154997_010--Hb_002869_070 Hb_154997_010--Hb_004124_010 Hb_159938_010 Hb_159938_010 Hb_154997_010--Hb_159938_010 Hb_002495_050--Hb_001124_170 Hb_021374_020 Hb_021374_020 Hb_002495_050--Hb_021374_020 Hb_002495_050--Hb_170973_010 Hb_001124_170--Hb_021374_020 Hb_001124_170--Hb_170973_010 Hb_050334_010 Hb_050334_010 Hb_002869_070--Hb_050334_010 Hb_002869_070--Hb_004124_010 Hb_002473_140 Hb_002473_140 Hb_002869_070--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002869_070--Hb_006157_050 Hb_170973_010--Hb_009268_030 Hb_170973_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_170973_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_170973_010--Hb_123396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0158931 0.00327601 0.0532012

CAGE analysis