Hb_123396_010

Information

Type -
Description -
Location Contig123396: 1570-1830
Sequence    

Annotation

kegg
ID atr:s00510p00011440
description AMTR_s00510p00011440; hypothetical protein
nr
ID ERM96855.1
description hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID K4ARX9
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc00g210860.1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123396_010 0.0 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
2 Hb_000987_110 0.0049241868 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
3 Hb_141425_010 0.0067969202 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
4 Hb_009268_030 0.0826396951 - - ribosomal protein S7 [Piper cenocladum]
5 Hb_170973_010 0.0827555779 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
6 Hb_004124_010 0.1274431142 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_004078_030 0.1351495574 - - Putative polyprotein, identical [Solanum demissum]
8 Hb_004019_060 0.1351708969 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_008601_020 0.1351769835 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_004989_010 0.1352277876 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
11 Hb_017184_010 0.1357971958 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
12 Hb_001952_080 0.1359018121 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
13 Hb_039316_010 0.1359534918 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
14 Hb_113614_010 0.1359823922 - - hypothetical protein VITISV_001308 [Vitis vinifera]
15 Hb_000029_430 0.1360472314 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
16 Hb_181107_010 0.136342406 - - hypothetical protein, partial [Pseudomonas tolaasii]
17 Hb_001168_090 0.1366340894 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
18 Hb_009577_010 0.1368557451 - - -
19 Hb_026405_010 0.1369011322 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
20 Hb_089844_010 0.1371090322 - - -

Gene co-expression network

sample Hb_123396_010 Hb_123396_010 Hb_000987_110 Hb_000987_110 Hb_123396_010--Hb_000987_110 Hb_141425_010 Hb_141425_010 Hb_123396_010--Hb_141425_010 Hb_009268_030 Hb_009268_030 Hb_123396_010--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_123396_010--Hb_170973_010 Hb_004124_010 Hb_004124_010 Hb_123396_010--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_123396_010--Hb_004078_030 Hb_000987_110--Hb_141425_010 Hb_000987_110--Hb_009268_030 Hb_000987_110--Hb_170973_010 Hb_000987_110--Hb_004124_010 Hb_000987_110--Hb_004078_030 Hb_141425_010--Hb_009268_030 Hb_141425_010--Hb_170973_010 Hb_141425_010--Hb_004124_010 Hb_141425_010--Hb_004078_030 Hb_009268_030--Hb_170973_010 Hb_009268_030--Hb_004124_010 Hb_001124_170 Hb_001124_170 Hb_009268_030--Hb_001124_170 Hb_170973_010--Hb_004124_010 Hb_170973_010--Hb_001124_170 Hb_006933_010 Hb_006933_010 Hb_004124_010--Hb_006933_010 Hb_002495_050 Hb_002495_050 Hb_004124_010--Hb_002495_050 Hb_004124_010--Hb_001124_170 Hb_004019_060 Hb_004019_060 Hb_004078_030--Hb_004019_060 Hb_008601_020 Hb_008601_020 Hb_004078_030--Hb_008601_020 Hb_004989_010 Hb_004989_010 Hb_004078_030--Hb_004989_010 Hb_017184_010 Hb_017184_010 Hb_004078_030--Hb_017184_010 Hb_001952_080 Hb_001952_080 Hb_004078_030--Hb_001952_080 Hb_039316_010 Hb_039316_010 Hb_004078_030--Hb_039316_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.568608 0 1.22264

CAGE analysis