Hb_039316_010

Information

Type -
Description -
Location Contig39316: 13-1215
Sequence    

Annotation

kegg
ID tcc:TCM_027657
description Gag protease polyprotein
nr
ID XP_012448747.1
description PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039316_010 0.0 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
2 Hb_113614_010 2.90966e-05 - - hypothetical protein VITISV_001308 [Vitis vinifera]
3 Hb_001952_080 5.20302e-05 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
4 Hb_000029_430 9.43761e-05 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
5 Hb_017184_010 0.0001573554 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
6 Hb_181107_010 0.0003915602 - - hypothetical protein, partial [Pseudomonas tolaasii]
7 Hb_001168_090 0.0006852374 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
8 Hb_004989_010 0.0007306037 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
9 Hb_008601_020 0.0007817489 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_004019_060 0.0007878763 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_004078_030 0.0008093591 - - Putative polyprotein, identical [Solanum demissum]
12 Hb_009577_010 0.0009084136 - - -
13 Hb_026405_010 0.0009541126 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
14 Hb_089844_010 0.0011634438 - - -
15 Hb_000110_110 0.0014529182 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_028998_010 0.0026353542 - - -
17 Hb_001369_430 0.0032631178 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
18 Hb_123396_010 0.1359534918 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
19 Hb_000987_110 0.1408399625 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
20 Hb_141425_010 0.1426975848 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_039316_010 Hb_039316_010 Hb_113614_010 Hb_113614_010 Hb_039316_010--Hb_113614_010 Hb_001952_080 Hb_001952_080 Hb_039316_010--Hb_001952_080 Hb_000029_430 Hb_000029_430 Hb_039316_010--Hb_000029_430 Hb_017184_010 Hb_017184_010 Hb_039316_010--Hb_017184_010 Hb_181107_010 Hb_181107_010 Hb_039316_010--Hb_181107_010 Hb_001168_090 Hb_001168_090 Hb_039316_010--Hb_001168_090 Hb_113614_010--Hb_000029_430 Hb_113614_010--Hb_001952_080 Hb_113614_010--Hb_017184_010 Hb_113614_010--Hb_181107_010 Hb_113614_010--Hb_001168_090 Hb_001952_080--Hb_017184_010 Hb_001952_080--Hb_000029_430 Hb_001952_080--Hb_181107_010 Hb_004989_010 Hb_004989_010 Hb_001952_080--Hb_004989_010 Hb_000029_430--Hb_017184_010 Hb_000029_430--Hb_181107_010 Hb_000029_430--Hb_001168_090 Hb_017184_010--Hb_181107_010 Hb_017184_010--Hb_004989_010 Hb_181107_010--Hb_001168_090 Hb_009577_010 Hb_009577_010 Hb_181107_010--Hb_009577_010 Hb_001168_090--Hb_009577_010 Hb_026405_010 Hb_026405_010 Hb_001168_090--Hb_026405_010 Hb_089844_010 Hb_089844_010 Hb_001168_090--Hb_089844_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0714254 0 0.0793954

CAGE analysis