Hb_000029_430

Information

Type -
Description -
Location Contig29: 360537-362706
Sequence    

Annotation

kegg
ID rcu:RCOM_0937910
description tRNA delta(2)-isopentenylpyrophosphate transferase, putative (EC:2.5.1.8)
nr
ID XP_012069588.1
description PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
swissprot
ID Q94ID2
description Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2
trembl
ID B9RZC3
description tRNA delta(2)-isopentenylpyrophosphate transferase, putative OS=Ricinus communis GN=RCOM_0937910 PE=4 SV=1
Gene Ontology
ID GO:0008033
description adenylate isopentenyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_430 0.0 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
2 Hb_113614_010 6.52795e-05 - - hypothetical protein VITISV_001308 [Vitis vinifera]
3 Hb_039316_010 9.43761e-05 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
4 Hb_001952_080 0.0001464063 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
5 Hb_017184_010 0.0002517315 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
6 Hb_181107_010 0.0002971841 - - hypothetical protein, partial [Pseudomonas tolaasii]
7 Hb_001168_090 0.0005908613 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
8 Hb_009577_010 0.0008140375 - - -
9 Hb_004989_010 0.0008249798 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
10 Hb_026405_010 0.0008597365 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
11 Hb_008601_020 0.000876125 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_004019_060 0.0008822524 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_004078_030 0.0009037352 - - Putative polyprotein, identical [Solanum demissum]
14 Hb_089844_010 0.0010690677 - - -
15 Hb_000110_110 0.0013585422 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_028998_010 0.0025409783 - - -
17 Hb_001369_430 0.003168742 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
18 Hb_123396_010 0.1360472314 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
19 Hb_000987_110 0.1409336539 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
20 Hb_141425_010 0.1427912573 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000029_430 Hb_000029_430 Hb_113614_010 Hb_113614_010 Hb_000029_430--Hb_113614_010 Hb_039316_010 Hb_039316_010 Hb_000029_430--Hb_039316_010 Hb_001952_080 Hb_001952_080 Hb_000029_430--Hb_001952_080 Hb_017184_010 Hb_017184_010 Hb_000029_430--Hb_017184_010 Hb_181107_010 Hb_181107_010 Hb_000029_430--Hb_181107_010 Hb_001168_090 Hb_001168_090 Hb_000029_430--Hb_001168_090 Hb_113614_010--Hb_039316_010 Hb_113614_010--Hb_001952_080 Hb_113614_010--Hb_017184_010 Hb_113614_010--Hb_181107_010 Hb_113614_010--Hb_001168_090 Hb_039316_010--Hb_001952_080 Hb_039316_010--Hb_017184_010 Hb_039316_010--Hb_181107_010 Hb_039316_010--Hb_001168_090 Hb_001952_080--Hb_017184_010 Hb_001952_080--Hb_181107_010 Hb_004989_010 Hb_004989_010 Hb_001952_080--Hb_004989_010 Hb_017184_010--Hb_181107_010 Hb_017184_010--Hb_004989_010 Hb_181107_010--Hb_001168_090 Hb_009577_010 Hb_009577_010 Hb_181107_010--Hb_009577_010 Hb_001168_090--Hb_009577_010 Hb_026405_010 Hb_026405_010 Hb_001168_090--Hb_026405_010 Hb_089844_010 Hb_089844_010 Hb_001168_090--Hb_089844_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0779555 0 0.0866156

CAGE analysis