Hb_026405_010

Information

Type -
Description -
Location Contig26405: 30-739
Sequence    

Annotation

kegg
ID cic:CICLE_v10006890mg
description hypothetical protein
nr
ID XP_009615107.1
description PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID E2GK51
description Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026405_010 0.0 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
2 Hb_009577_010 4.5699e-05 - - -
3 Hb_089844_010 0.0002093312 - - -
4 Hb_001168_090 0.0002688752 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
5 Hb_000110_110 0.0004988059 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
6 Hb_181107_010 0.0005625524 - - hypothetical protein, partial [Pseudomonas tolaasii]
7 Hb_000029_430 0.0008597365 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
8 Hb_113614_010 0.000925016 - - hypothetical protein VITISV_001308 [Vitis vinifera]
9 Hb_039316_010 0.0009541126 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
10 Hb_001952_080 0.0010061428 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
11 Hb_017184_010 0.0011114679 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
12 Hb_028998_010 0.0016812431 - - -
13 Hb_004989_010 0.0016847159 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
14 Hb_008601_020 0.0017358611 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004019_060 0.0017419885 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_004078_030 0.0017634712 - - Putative polyprotein, identical [Solanum demissum]
17 Hb_001369_430 0.0023090077 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
18 Hb_123396_010 0.1369011322 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
19 Hb_000987_110 0.141787114 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
20 Hb_141425_010 0.1436445453 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_026405_010 Hb_026405_010 Hb_009577_010 Hb_009577_010 Hb_026405_010--Hb_009577_010 Hb_089844_010 Hb_089844_010 Hb_026405_010--Hb_089844_010 Hb_001168_090 Hb_001168_090 Hb_026405_010--Hb_001168_090 Hb_000110_110 Hb_000110_110 Hb_026405_010--Hb_000110_110 Hb_181107_010 Hb_181107_010 Hb_026405_010--Hb_181107_010 Hb_000029_430 Hb_000029_430 Hb_026405_010--Hb_000029_430 Hb_009577_010--Hb_001168_090 Hb_009577_010--Hb_089844_010 Hb_009577_010--Hb_181107_010 Hb_009577_010--Hb_000110_110 Hb_009577_010--Hb_000029_430 Hb_089844_010--Hb_000110_110 Hb_089844_010--Hb_001168_090 Hb_089844_010--Hb_181107_010 Hb_089844_010--Hb_000029_430 Hb_001168_090--Hb_181107_010 Hb_001168_090--Hb_000029_430 Hb_113614_010 Hb_113614_010 Hb_001168_090--Hb_113614_010 Hb_000110_110--Hb_001168_090 Hb_000110_110--Hb_181107_010 Hb_028998_010 Hb_028998_010 Hb_000110_110--Hb_028998_010 Hb_181107_010--Hb_000029_430 Hb_181107_010--Hb_113614_010 Hb_039316_010 Hb_039316_010 Hb_181107_010--Hb_039316_010 Hb_001952_080 Hb_001952_080 Hb_181107_010--Hb_001952_080 Hb_000029_430--Hb_113614_010 Hb_000029_430--Hb_039316_010 Hb_000029_430--Hb_001952_080 Hb_017184_010 Hb_017184_010 Hb_000029_430--Hb_017184_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.137568 0 0.152232

CAGE analysis