Hb_028998_010

Information

Type -
Description -
Location Contig28998: 28-512
Sequence    

Annotation

kegg
ID tcc:TCM_013491
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M1DXK3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400045601 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028998_010 0.0 - - -
2 Hb_001369_430 0.0006277655 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
3 Hb_000110_110 0.0011824376 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_089844_010 0.001471912 - - -
5 Hb_026405_010 0.0016812431 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
6 Hb_009577_010 0.0017269421 - - -
7 Hb_001168_090 0.001950118 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
8 Hb_181107_010 0.0022437948 - - hypothetical protein, partial [Pseudomonas tolaasii]
9 Hb_000029_430 0.0025409783 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
10 Hb_113614_010 0.0026062577 - - hypothetical protein VITISV_001308 [Vitis vinifera]
11 Hb_039316_010 0.0026353542 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
12 Hb_001952_080 0.0026873843 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
13 Hb_017184_010 0.0027927092 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
14 Hb_004989_010 0.0033659557 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
15 Hb_008601_020 0.0034171007 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_004019_060 0.0034232281 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_004078_030 0.0034447108 - - Putative polyprotein, identical [Solanum demissum]
18 Hb_123396_010 0.138570766 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
19 Hb_000987_110 0.1434558795 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
20 Hb_010736_030 0.1445236018 - - -

Gene co-expression network

sample Hb_028998_010 Hb_028998_010 Hb_001369_430 Hb_001369_430 Hb_028998_010--Hb_001369_430 Hb_000110_110 Hb_000110_110 Hb_028998_010--Hb_000110_110 Hb_089844_010 Hb_089844_010 Hb_028998_010--Hb_089844_010 Hb_026405_010 Hb_026405_010 Hb_028998_010--Hb_026405_010 Hb_009577_010 Hb_009577_010 Hb_028998_010--Hb_009577_010 Hb_001168_090 Hb_001168_090 Hb_028998_010--Hb_001168_090 Hb_001369_430--Hb_000110_110 Hb_001369_430--Hb_089844_010 Hb_001369_430--Hb_026405_010 Hb_001369_430--Hb_009577_010 Hb_001369_430--Hb_001168_090 Hb_000110_110--Hb_089844_010 Hb_000110_110--Hb_026405_010 Hb_000110_110--Hb_009577_010 Hb_000110_110--Hb_001168_090 Hb_181107_010 Hb_181107_010 Hb_000110_110--Hb_181107_010 Hb_089844_010--Hb_026405_010 Hb_089844_010--Hb_009577_010 Hb_089844_010--Hb_001168_090 Hb_089844_010--Hb_181107_010 Hb_000029_430 Hb_000029_430 Hb_089844_010--Hb_000029_430 Hb_026405_010--Hb_009577_010 Hb_026405_010--Hb_001168_090 Hb_026405_010--Hb_181107_010 Hb_026405_010--Hb_000029_430 Hb_009577_010--Hb_001168_090 Hb_009577_010--Hb_181107_010 Hb_009577_010--Hb_000029_430 Hb_001168_090--Hb_181107_010 Hb_001168_090--Hb_000029_430 Hb_113614_010 Hb_113614_010 Hb_001168_090--Hb_113614_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.254617 0 0.279533

CAGE analysis