Hb_004989_010

Information

Type -
Description -
Location Contig4989: 2683-7672
Sequence    

Annotation

kegg
ID tcc:TCM_013113
description Retrotransposon protein, putative
nr
ID AAX96518.1
description retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q53LV8
description Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g20220 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004989_010 0.0 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
2 Hb_008601_020 5.11453e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_004019_060 5.72726e-05 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_004078_030 7.87554e-05 - - Putative polyprotein, identical [Solanum demissum]
5 Hb_017184_010 0.0005732484 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
6 Hb_001952_080 0.0006785735 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
7 Hb_039316_010 0.0007306037 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
8 Hb_113614_010 0.0007597003 - - hypothetical protein VITISV_001308 [Vitis vinifera]
9 Hb_000029_430 0.0008249798 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
10 Hb_181107_010 0.0011221638 - - hypothetical protein, partial [Pseudomonas tolaasii]
11 Hb_001168_090 0.0014158409 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
12 Hb_009577_010 0.0016390169 - - -
13 Hb_026405_010 0.0016847159 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
14 Hb_089844_010 0.0018940469 - - -
15 Hb_000110_110 0.0021835211 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_028998_010 0.0033659557 - - -
17 Hb_001369_430 0.0039937182 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
18 Hb_123396_010 0.1352277876 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
19 Hb_000987_110 0.1401146308 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
20 Hb_141425_010 0.1419723985 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_004989_010 Hb_004989_010 Hb_008601_020 Hb_008601_020 Hb_004989_010--Hb_008601_020 Hb_004019_060 Hb_004019_060 Hb_004989_010--Hb_004019_060 Hb_004078_030 Hb_004078_030 Hb_004989_010--Hb_004078_030 Hb_017184_010 Hb_017184_010 Hb_004989_010--Hb_017184_010 Hb_001952_080 Hb_001952_080 Hb_004989_010--Hb_001952_080 Hb_039316_010 Hb_039316_010 Hb_004989_010--Hb_039316_010 Hb_008601_020--Hb_004019_060 Hb_008601_020--Hb_004078_030 Hb_008601_020--Hb_017184_010 Hb_008601_020--Hb_001952_080 Hb_008601_020--Hb_039316_010 Hb_004019_060--Hb_004078_030 Hb_004019_060--Hb_017184_010 Hb_004019_060--Hb_001952_080 Hb_004019_060--Hb_039316_010 Hb_004078_030--Hb_017184_010 Hb_004078_030--Hb_001952_080 Hb_004078_030--Hb_039316_010 Hb_017184_010--Hb_001952_080 Hb_017184_010--Hb_039316_010 Hb_113614_010 Hb_113614_010 Hb_017184_010--Hb_113614_010 Hb_000029_430 Hb_000029_430 Hb_017184_010--Hb_000029_430 Hb_181107_010 Hb_181107_010 Hb_017184_010--Hb_181107_010 Hb_001952_080--Hb_039316_010 Hb_001952_080--Hb_113614_010 Hb_001952_080--Hb_000029_430 Hb_001952_080--Hb_181107_010 Hb_039316_010--Hb_113614_010 Hb_039316_010--Hb_000029_430 Hb_039316_010--Hb_181107_010 Hb_001168_090 Hb_001168_090 Hb_039316_010--Hb_001168_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0210324 0 0.02346

CAGE analysis