Hb_004124_010

Information

Type -
Description -
Location Contig4124: 41928-49490
Sequence    

Annotation

kegg
ID pda:103712006
description uncharacterized LOC103712006
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQ96
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_043763 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004124_010 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_006933_010 0.0526476225 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002495_050 0.1164174149 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
4 Hb_001124_170 0.1165755556 - - putative retrotransposon protein [Phyllostachys edulis]
5 Hb_009268_030 0.1219823838 - - ribosomal protein S7 [Piper cenocladum]
6 Hb_170973_010 0.1220134593 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
7 Hb_141425_010 0.1249868629 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
8 Hb_000987_110 0.1256324001 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
9 Hb_154997_010 0.1257069616 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
10 Hb_002869_070 0.1268774001 - - -
11 Hb_123396_010 0.1274431142 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
12 Hb_106815_010 0.1504108055 - - hypothetical protein, conserved [Eimeria acervulina]
13 Hb_002473_140 0.1998277578 - - -
14 Hb_021374_020 0.2075233555 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
15 Hb_171685_030 0.2122216629 - - URF-1 [Citrullus lanatus]
16 Hb_006157_050 0.212330867 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_004078_030 0.2174831738 - - Putative polyprotein, identical [Solanum demissum]
18 Hb_004019_060 0.2175008917 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_008601_020 0.2175059454 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_004989_010 0.2175481301 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_004124_010 Hb_004124_010 Hb_006933_010 Hb_006933_010 Hb_004124_010--Hb_006933_010 Hb_002495_050 Hb_002495_050 Hb_004124_010--Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_004124_010--Hb_001124_170 Hb_009268_030 Hb_009268_030 Hb_004124_010--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_004124_010--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_004124_010--Hb_141425_010 Hb_154997_010 Hb_154997_010 Hb_006933_010--Hb_154997_010 Hb_006933_010--Hb_002495_050 Hb_006933_010--Hb_001124_170 Hb_002869_070 Hb_002869_070 Hb_006933_010--Hb_002869_070 Hb_006933_010--Hb_170973_010 Hb_002495_050--Hb_001124_170 Hb_002495_050--Hb_154997_010 Hb_021374_020 Hb_021374_020 Hb_002495_050--Hb_021374_020 Hb_002495_050--Hb_170973_010 Hb_001124_170--Hb_154997_010 Hb_001124_170--Hb_021374_020 Hb_001124_170--Hb_170973_010 Hb_009268_030--Hb_170973_010 Hb_009268_030--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_009268_030--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_009268_030--Hb_123396_010 Hb_009268_030--Hb_001124_170 Hb_170973_010--Hb_141425_010 Hb_170973_010--Hb_000987_110 Hb_170973_010--Hb_123396_010 Hb_141425_010--Hb_000987_110 Hb_141425_010--Hb_123396_010 Hb_004078_030 Hb_004078_030 Hb_141425_010--Hb_004078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0944199 0.0100407 0.262824

CAGE analysis