Hb_021374_020

Information

Type -
Description -
Location Contig21374: 25260-26493
Sequence    

Annotation

kegg
ID fve:101298847
description uncharacterized protein LOC101298847
nr
ID XP_004309278.1
description PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID A0A0D3A5H9
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22086: 22521-34176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021374_020 0.0 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
2 Hb_001124_170 0.0974635473 - - putative retrotransposon protein [Phyllostachys edulis]
3 Hb_002495_050 0.098631893 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
4 Hb_097433_030 0.1302668854 - - hypothetical protein CISIN_1g0017192mg, partial [Citrus sinensis]
5 Hb_143004_010 0.1304854786 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
6 Hb_104735_010 0.1663998354 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
7 Hb_013420_020 0.1674596184 - - conserved hypothetical protein [Ricinus communis]
8 Hb_154997_010 0.1751787225 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
9 Hb_027357_010 0.1803298487 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_012163_050 0.18143965 - - ATPase subunit [Medicago truncatula]
11 Hb_006933_010 0.1852993264 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_171685_080 0.1864584173 - - unknown [Allium cepa]
13 Hb_013420_090 0.1948222064 - - BnaCnng13090D [Brassica napus]
14 Hb_171685_060 0.1961006849 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
15 Hb_170973_010 0.1992369692 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
16 Hb_009268_030 0.1993359414 - - ribosomal protein S7 [Piper cenocladum]
17 Hb_013420_050 0.2015180706 - - hypothetical protein (mitochondrion) [Vicia faba]
18 Hb_004987_050 0.2051074454 - - -
19 Hb_018283_010 0.2064874996 - - hypothetical protein VITISV_023498 [Vitis vinifera]
20 Hb_004124_010 0.2075233555 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_021374_020 Hb_021374_020 Hb_001124_170 Hb_001124_170 Hb_021374_020--Hb_001124_170 Hb_002495_050 Hb_002495_050 Hb_021374_020--Hb_002495_050 Hb_097433_030 Hb_097433_030 Hb_021374_020--Hb_097433_030 Hb_143004_010 Hb_143004_010 Hb_021374_020--Hb_143004_010 Hb_104735_010 Hb_104735_010 Hb_021374_020--Hb_104735_010 Hb_013420_020 Hb_013420_020 Hb_021374_020--Hb_013420_020 Hb_001124_170--Hb_002495_050 Hb_006933_010 Hb_006933_010 Hb_001124_170--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_001124_170--Hb_154997_010 Hb_004124_010 Hb_004124_010 Hb_001124_170--Hb_004124_010 Hb_170973_010 Hb_170973_010 Hb_001124_170--Hb_170973_010 Hb_002495_050--Hb_006933_010 Hb_002495_050--Hb_154997_010 Hb_002495_050--Hb_004124_010 Hb_002495_050--Hb_170973_010 Hb_097433_030--Hb_143004_010 Hb_033623_030 Hb_033623_030 Hb_097433_030--Hb_033623_030 Hb_013420_050 Hb_013420_050 Hb_097433_030--Hb_013420_050 Hb_171685_080 Hb_171685_080 Hb_097433_030--Hb_171685_080 Hb_012163_050 Hb_012163_050 Hb_097433_030--Hb_012163_050 Hb_000789_210 Hb_000789_210 Hb_143004_010--Hb_000789_210 Hb_000668_030 Hb_000668_030 Hb_143004_010--Hb_000668_030 Hb_001115_060 Hb_001115_060 Hb_143004_010--Hb_001115_060 Hb_004984_090 Hb_004984_090 Hb_143004_010--Hb_004984_090 Hb_002281_060 Hb_002281_060 Hb_143004_010--Hb_002281_060 Hb_041813_030 Hb_041813_030 Hb_104735_010--Hb_041813_030 Hb_159305_020 Hb_159305_020 Hb_104735_010--Hb_159305_020 Hb_104735_010--Hb_012163_050 Hb_104735_010--Hb_097433_030 Hb_042463_070 Hb_042463_070 Hb_104735_010--Hb_042463_070 Hb_013420_020--Hb_012163_050 Hb_156746_010 Hb_156746_010 Hb_013420_020--Hb_156746_010 Hb_006040_030 Hb_006040_030 Hb_013420_020--Hb_006040_030 Hb_171685_060 Hb_171685_060 Hb_013420_020--Hb_171685_060 Hb_027357_010 Hb_027357_010 Hb_013420_020--Hb_027357_010 Hb_013420_020--Hb_171685_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0877347 0.0194602 0.974162

CAGE analysis