Hb_033623_030

Information

Type -
Description -
Location Contig33623: 53088-60002
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06920g
description hypothetical protein
nr
ID XP_012084663.1
description PREDICTED: isoprene synthase, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID Q50L36
description Isoprene synthase, chloroplastic OS=Populus alba GN=ISPS PE=1 SV=1
trembl
ID A0A067K4Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20298 PE=4 SV=1
Gene Ontology
ID GO:0000287
description isoprene synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35216: 57137-59925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033623_030 0.0 - - PREDICTED: isoprene synthase, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_000627_060 0.0772265467 - - -
3 Hb_002704_090 0.0788282674 - - cytochrome P450, putative [Ricinus communis]
4 Hb_002093_010 0.0792310999 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
5 Hb_006435_020 0.0794165578 - - sugar transporter, putative [Ricinus communis]
6 Hb_031194_030 0.0809187969 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
7 Hb_007741_060 0.0810926656 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
8 Hb_002276_110 0.0825914348 - - protein binding protein, putative [Ricinus communis]
9 Hb_059280_010 0.0827685574 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
10 Hb_088080_010 0.0828761986 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
11 Hb_007219_010 0.0836258276 - - -
12 Hb_004567_080 0.0871396342 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
13 Hb_004643_030 0.0871596204 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002835_420 0.0877620761 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
15 Hb_177343_020 0.0894218841 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
16 Hb_007595_030 0.0897394173 - - psbA gene product (chloroplast) [Silene noctiflora]
17 Hb_004161_040 0.0904542037 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
18 Hb_154980_010 0.0916557311 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
19 Hb_003120_090 0.0939179522 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
20 Hb_000574_080 0.0939610828 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_033623_030 Hb_033623_030 Hb_000627_060 Hb_000627_060 Hb_033623_030--Hb_000627_060 Hb_002704_090 Hb_002704_090 Hb_033623_030--Hb_002704_090 Hb_002093_010 Hb_002093_010 Hb_033623_030--Hb_002093_010 Hb_006435_020 Hb_006435_020 Hb_033623_030--Hb_006435_020 Hb_031194_030 Hb_031194_030 Hb_033623_030--Hb_031194_030 Hb_007741_060 Hb_007741_060 Hb_033623_030--Hb_007741_060 Hb_000627_060--Hb_002093_010 Hb_000627_060--Hb_007741_060 Hb_000627_060--Hb_006435_020 Hb_000627_060--Hb_002704_090 Hb_004567_080 Hb_004567_080 Hb_000627_060--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_000627_060--Hb_004643_030 Hb_002704_090--Hb_002093_010 Hb_003120_090 Hb_003120_090 Hb_002704_090--Hb_003120_090 Hb_005018_050 Hb_005018_050 Hb_002704_090--Hb_005018_050 Hb_007933_010 Hb_007933_010 Hb_002704_090--Hb_007933_010 Hb_002704_090--Hb_031194_030 Hb_002093_010--Hb_007741_060 Hb_002093_010--Hb_007933_010 Hb_002093_010--Hb_006435_020 Hb_002093_010--Hb_003120_090 Hb_006435_020--Hb_007741_060 Hb_006435_020--Hb_002704_090 Hb_006435_020--Hb_004567_080 Hb_006435_020--Hb_004643_030 Hb_088080_010 Hb_088080_010 Hb_031194_030--Hb_088080_010 Hb_031194_030--Hb_005018_050 Hb_007595_030 Hb_007595_030 Hb_031194_030--Hb_007595_030 Hb_031194_030--Hb_003120_090 Hb_003407_050 Hb_003407_050 Hb_031194_030--Hb_003407_050 Hb_177343_020 Hb_177343_020 Hb_007741_060--Hb_177343_020 Hb_007741_060--Hb_004643_030 Hb_007741_060--Hb_004567_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0190017 1.38552 31.9271 1.60455 0.131331 0.0446977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259039 0.543526 3.61126 0.857876 583.767

CAGE analysis