Hb_159305_020

Information

Type -
Description -
Location Contig159305: 2501-4097
Sequence    

Annotation

kegg
ID mtr:MTR_4g051430
description 50S ribosomal protein L2-B
nr
ID XP_003606061.1
description 50S ribosomal protein L2-B [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7JH62
description 50S ribosomal protein L2 OS=Medicago truncatula GN=MTR_4g051430 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14134: 2459-2600 , PASA_asmbl_14135: 2984-3542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159305_020 0.0 - - 50S ribosomal protein L2-B [Medicago truncatula]
2 Hb_027745_010 0.106182858 - - 50S ribosomal protein L2, putative [Ricinus communis]
3 Hb_008085_020 0.1318093729 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
4 Hb_041813_030 0.1477578177 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
5 Hb_103255_010 0.1486680099 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_007645_020 0.1530406369 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
7 Hb_006040_010 0.1572030061 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
8 Hb_006040_030 0.160882404 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
9 Hb_159305_010 0.1610152337 - - rpl2 [Jatropha curcas]
10 Hb_000326_100 0.1620117228 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
11 Hb_003963_030 0.1661421585 - - psbB [Jatropha curcas]
12 Hb_003688_030 0.1667727402 - - NADH dehydrogenase 2-like ORF 180
13 Hb_051924_010 0.1669333454 - - BnaA01g34100D [Brassica napus]
14 Hb_171685_080 0.1735316851 - - unknown [Allium cepa]
15 Hb_072695_010 0.173546354 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
16 Hb_154980_010 0.1741815157 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
17 Hb_019253_040 0.1743720818 - - conserved hypothetical protein [Ricinus communis]
18 Hb_171685_060 0.1759546042 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
19 Hb_106850_010 0.176722924 - - photosystem II protein D2 [Lactuca sativa]
20 Hb_000388_020 0.1771821722 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_159305_020 Hb_159305_020 Hb_027745_010 Hb_027745_010 Hb_159305_020--Hb_027745_010 Hb_008085_020 Hb_008085_020 Hb_159305_020--Hb_008085_020 Hb_041813_030 Hb_041813_030 Hb_159305_020--Hb_041813_030 Hb_103255_010 Hb_103255_010 Hb_159305_020--Hb_103255_010 Hb_007645_020 Hb_007645_020 Hb_159305_020--Hb_007645_020 Hb_006040_010 Hb_006040_010 Hb_159305_020--Hb_006040_010 Hb_003915_030 Hb_003915_030 Hb_027745_010--Hb_003915_030 Hb_027745_010--Hb_008085_020 Hb_027745_010--Hb_006040_010 Hb_145745_010 Hb_145745_010 Hb_027745_010--Hb_145745_010 Hb_027745_010--Hb_103255_010 Hb_008085_020--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_008085_020--Hb_006040_020 Hb_171685_080 Hb_171685_080 Hb_008085_020--Hb_171685_080 Hb_006040_030 Hb_006040_030 Hb_008085_020--Hb_006040_030 Hb_000326_100 Hb_000326_100 Hb_008085_020--Hb_000326_100 Hb_008085_020--Hb_007645_020 Hb_042463_070 Hb_042463_070 Hb_041813_030--Hb_042463_070 Hb_156746_010 Hb_156746_010 Hb_041813_030--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_041813_030--Hb_006040_030 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_000388_020 Hb_000388_020 Hb_103255_010--Hb_000388_020 Hb_072695_010 Hb_072695_010 Hb_103255_010--Hb_072695_010 Hb_000959_380 Hb_000959_380 Hb_103255_010--Hb_000959_380 Hb_006302_050 Hb_006302_050 Hb_103255_010--Hb_006302_050 Hb_003144_020 Hb_003144_020 Hb_103255_010--Hb_003144_020 Hb_106850_010 Hb_106850_010 Hb_103255_010--Hb_106850_010 Hb_003688_030 Hb_003688_030 Hb_007645_020--Hb_003688_030 Hb_003693_040 Hb_003693_040 Hb_007645_020--Hb_003693_040 Hb_104509_010 Hb_104509_010 Hb_007645_020--Hb_104509_010 Hb_007645_020--Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_007645_020--Hb_154980_010 Hb_007645_020--Hb_000959_380 Hb_006040_010--Hb_006040_020 Hb_006040_010--Hb_006040_030 Hb_006040_010--Hb_171685_080 Hb_006040_010--Hb_007645_020 Hb_006040_010--Hb_003688_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124825 0.0874786 1.4172 2.42466 0.0983553 1.45291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91484 2.20239 4.02658 0.471128 155.263

CAGE analysis