Hb_032531_010

Information

Type -
Description -
Location Contig32531: 16211-20866
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032531_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000940_190 0.0597885837 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
3 Hb_099723_010 0.0647757189 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
4 Hb_050334_010 0.0762775691 - - -
5 Hb_065943_010 0.0840355844 - - -
6 Hb_006157_050 0.0956830686 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_012295_020 0.1255808245 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
8 Hb_012071_010 0.13450572 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_001519_210 0.1409724054 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
10 Hb_002869_070 0.1576867753 - - -
11 Hb_004212_040 0.1662977045 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_000065_050 0.1848653916 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_002473_140 0.1896157313 - - -
14 Hb_002571_090 0.2055649286 - - -
15 Hb_106815_010 0.2253099208 - - hypothetical protein, conserved [Eimeria acervulina]
16 Hb_000205_340 0.22619264 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
17 Hb_088410_010 0.2412435356 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_043792_020 0.243150302 - - Retrotransposon gag protein [Medicago truncatula]
19 Hb_142570_010 0.2593146411 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
20 Hb_159938_010 0.2627302436 - - phosphoprotein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_032531_010 Hb_032531_010 Hb_000940_190 Hb_000940_190 Hb_032531_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_032531_010--Hb_099723_010 Hb_050334_010 Hb_050334_010 Hb_032531_010--Hb_050334_010 Hb_065943_010 Hb_065943_010 Hb_032531_010--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_032531_010--Hb_006157_050 Hb_012295_020 Hb_012295_020 Hb_032531_010--Hb_012295_020 Hb_000940_190--Hb_099723_010 Hb_000940_190--Hb_065943_010 Hb_000940_190--Hb_006157_050 Hb_000940_190--Hb_050334_010 Hb_002869_070 Hb_002869_070 Hb_000940_190--Hb_002869_070 Hb_099723_010--Hb_065943_010 Hb_099723_010--Hb_006157_050 Hb_099723_010--Hb_050334_010 Hb_099723_010--Hb_002869_070 Hb_001519_210 Hb_001519_210 Hb_050334_010--Hb_001519_210 Hb_050334_010--Hb_002869_070 Hb_050334_010--Hb_065943_010 Hb_065943_010--Hb_006157_050 Hb_065943_010--Hb_002869_070 Hb_006157_050--Hb_050334_010 Hb_006157_050--Hb_002869_070 Hb_012071_010 Hb_012071_010 Hb_012295_020--Hb_012071_010 Hb_000065_050 Hb_000065_050 Hb_012295_020--Hb_000065_050 Hb_012295_020--Hb_001519_210 Hb_012295_020--Hb_050334_010 Hb_155556_010 Hb_155556_010 Hb_012295_020--Hb_155556_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.015571 0.00641722 0.0173748

CAGE analysis