Hb_000065_050

Information

Type -
Description -
Location Contig65: 134856-136150
Sequence    

Annotation

kegg
ID vvi:104877935
description uncharacterized LOC104877935
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M5XKU8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021588mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000065_050 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_012071_010 0.1215497774 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_012295_020 0.1227719052 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
4 Hb_001652_110 0.1280657089 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
5 Hb_002571_090 0.1339993521 - - -
6 Hb_000574_550 0.1507369781 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
7 Hb_032531_010 0.1848653916 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_005007_040 0.1871806621 - - hypothetical protein VITISV_032357 [Vitis vinifera]
9 Hb_002092_040 0.2241086978 - - PREDICTED: protein YLS3 [Jatropha curcas]
10 Hb_000205_340 0.2286337207 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
11 Hb_000940_190 0.2299341166 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
12 Hb_099723_010 0.2342784371 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
13 Hb_000296_060 0.2365064881 - - -
14 Hb_050334_010 0.2451668967 - - -
15 Hb_187513_010 0.2484268031 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
16 Hb_065943_010 0.2512290032 - - -
17 Hb_155556_010 0.2514538933 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
18 Hb_001519_210 0.2558194418 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
19 Hb_006157_050 0.2616097897 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_001304_120 0.2644512186 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000065_050 Hb_000065_050 Hb_012071_010 Hb_012071_010 Hb_000065_050--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_000065_050--Hb_012295_020 Hb_001652_110 Hb_001652_110 Hb_000065_050--Hb_001652_110 Hb_002571_090 Hb_002571_090 Hb_000065_050--Hb_002571_090 Hb_000574_550 Hb_000574_550 Hb_000065_050--Hb_000574_550 Hb_032531_010 Hb_032531_010 Hb_000065_050--Hb_032531_010 Hb_012071_010--Hb_012295_020 Hb_012071_010--Hb_032531_010 Hb_001519_210 Hb_001519_210 Hb_012071_010--Hb_001519_210 Hb_155556_010 Hb_155556_010 Hb_012071_010--Hb_155556_010 Hb_050334_010 Hb_050334_010 Hb_012071_010--Hb_050334_010 Hb_012295_020--Hb_032531_010 Hb_012295_020--Hb_001519_210 Hb_012295_020--Hb_050334_010 Hb_012295_020--Hb_155556_010 Hb_001652_110--Hb_000574_550 Hb_005007_040 Hb_005007_040 Hb_001652_110--Hb_005007_040 Hb_001652_110--Hb_012071_010 Hb_006683_010 Hb_006683_010 Hb_001652_110--Hb_006683_010 Hb_001652_110--Hb_012295_020 Hb_000205_340 Hb_000205_340 Hb_002571_090--Hb_000205_340 Hb_000296_060 Hb_000296_060 Hb_002571_090--Hb_000296_060 Hb_002571_090--Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_002571_090--Hb_187513_010 Hb_003551_030 Hb_003551_030 Hb_002571_090--Hb_003551_030 Hb_000574_550--Hb_187513_010 Hb_003226_290 Hb_003226_290 Hb_000574_550--Hb_003226_290 Hb_000574_550--Hb_000296_060 Hb_000940_190 Hb_000940_190 Hb_032531_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_032531_010--Hb_099723_010 Hb_032531_010--Hb_050334_010 Hb_065943_010 Hb_065943_010 Hb_032531_010--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_032531_010--Hb_006157_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.131531 0.0855338 0.0731322

CAGE analysis