Hb_001652_110

Information

Type -
Description -
Location Contig1652: 147224-149931
Sequence    

Annotation

kegg
ID sot:102595262
description uncharacterized LOC102595262
nr
ID XP_009802667.1
description PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1AZY6
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_110 0.0 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
2 Hb_000065_050 0.1280657089 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_000574_550 0.1388722583 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
4 Hb_005007_040 0.1994637016 - - hypothetical protein VITISV_032357 [Vitis vinifera]
5 Hb_012071_010 0.2043644978 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
6 Hb_006683_010 0.2076743816 - - cell wall invertase [Manihot esculenta]
7 Hb_012295_020 0.2103486697 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
8 Hb_000050_130 0.2115203652 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
9 Hb_002092_040 0.222767445 - - PREDICTED: protein YLS3 [Jatropha curcas]
10 Hb_002571_090 0.229013094 - - -
11 Hb_002675_120 0.246904417 - - DNA-repair protein xrcc1, putative [Ricinus communis]
12 Hb_003226_290 0.2470530015 - - catalytic, putative [Ricinus communis]
13 Hb_155556_010 0.2659024012 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
14 Hb_001780_010 0.2660352428 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
15 Hb_187513_010 0.2745314091 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
16 Hb_018609_030 0.2862683375 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000160_100 0.2887900902 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
18 Hb_054362_010 0.293748861 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
19 Hb_000296_060 0.2944345544 - - -
20 Hb_127993_010 0.2951296978 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_001652_110 Hb_001652_110 Hb_000065_050 Hb_000065_050 Hb_001652_110--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_001652_110--Hb_000574_550 Hb_005007_040 Hb_005007_040 Hb_001652_110--Hb_005007_040 Hb_012071_010 Hb_012071_010 Hb_001652_110--Hb_012071_010 Hb_006683_010 Hb_006683_010 Hb_001652_110--Hb_006683_010 Hb_012295_020 Hb_012295_020 Hb_001652_110--Hb_012295_020 Hb_000065_050--Hb_012071_010 Hb_000065_050--Hb_012295_020 Hb_002571_090 Hb_002571_090 Hb_000065_050--Hb_002571_090 Hb_000065_050--Hb_000574_550 Hb_032531_010 Hb_032531_010 Hb_000065_050--Hb_032531_010 Hb_187513_010 Hb_187513_010 Hb_000574_550--Hb_187513_010 Hb_000574_550--Hb_002571_090 Hb_003226_290 Hb_003226_290 Hb_000574_550--Hb_003226_290 Hb_000296_060 Hb_000296_060 Hb_000574_550--Hb_000296_060 Hb_005007_040--Hb_000065_050 Hb_001304_120 Hb_001304_120 Hb_005007_040--Hb_001304_120 Hb_005007_040--Hb_000574_550 Hb_005007_040--Hb_012071_010 Hb_005007_040--Hb_012295_020 Hb_012071_010--Hb_012295_020 Hb_012071_010--Hb_032531_010 Hb_001519_210 Hb_001519_210 Hb_012071_010--Hb_001519_210 Hb_155556_010 Hb_155556_010 Hb_012071_010--Hb_155556_010 Hb_050334_010 Hb_050334_010 Hb_012071_010--Hb_050334_010 Hb_002675_120 Hb_002675_120 Hb_006683_010--Hb_002675_120 Hb_000050_130 Hb_000050_130 Hb_006683_010--Hb_000050_130 Hb_008779_010 Hb_008779_010 Hb_006683_010--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_006683_010--Hb_008643_010 Hb_000160_100 Hb_000160_100 Hb_006683_010--Hb_000160_100 Hb_012295_020--Hb_032531_010 Hb_012295_020--Hb_001519_210 Hb_012295_020--Hb_050334_010 Hb_012295_020--Hb_155556_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.696861 0.719072 0.273965

CAGE analysis