Hb_187513_010

Information

Type -
Description -
Location Contig187513: 7495-8402
Sequence    

Annotation

kegg
ID csv:101217708
description uncharacterized LOC101217708
nr
ID XP_012435311.1
description PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MYZ3
description Protein MCM10 OS=Gossypium arboreum GN=F383_31527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187513_010 0.0 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
2 Hb_069783_020 0.1008270522 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
3 Hb_000296_060 0.108156474 - - -
4 Hb_000574_550 0.1382471846 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
5 Hb_002571_090 0.1589706895 - - -
6 Hb_012424_010 0.1591202101 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
7 Hb_003551_030 0.17479796 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
8 Hb_000276_050 0.1820479742 - - -
9 Hb_003226_290 0.1837271873 - - catalytic, putative [Ricinus communis]
10 Hb_000205_340 0.1951163553 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
11 Hb_047040_010 0.2152744825 - - integrase [Gossypium herbaceum]
12 Hb_000590_020 0.215275922 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
13 Hb_022206_060 0.2155095728 - - -
14 Hb_000139_440 0.2156496206 - - unnamed protein product [Coffea canephora]
15 Hb_090826_010 0.2157562237 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
16 Hb_001987_010 0.2159760877 - - -
17 Hb_030928_010 0.2161178184 - - -
18 Hb_181535_010 0.2161794035 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000351_030 0.2164050042 - - putative NBS-LRR type disease resistance protein [Prunus persica]
20 Hb_139388_010 0.216436929 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_187513_010 Hb_187513_010 Hb_069783_020 Hb_069783_020 Hb_187513_010--Hb_069783_020 Hb_000296_060 Hb_000296_060 Hb_187513_010--Hb_000296_060 Hb_000574_550 Hb_000574_550 Hb_187513_010--Hb_000574_550 Hb_002571_090 Hb_002571_090 Hb_187513_010--Hb_002571_090 Hb_012424_010 Hb_012424_010 Hb_187513_010--Hb_012424_010 Hb_003551_030 Hb_003551_030 Hb_187513_010--Hb_003551_030 Hb_069783_020--Hb_003551_030 Hb_069783_020--Hb_000296_060 Hb_069783_020--Hb_012424_010 Hb_001987_010 Hb_001987_010 Hb_069783_020--Hb_001987_010 Hb_000276_050 Hb_000276_050 Hb_069783_020--Hb_000276_050 Hb_000296_060--Hb_002571_090 Hb_000296_060--Hb_003551_030 Hb_000205_340 Hb_000205_340 Hb_000296_060--Hb_000205_340 Hb_000296_060--Hb_012424_010 Hb_001652_110 Hb_001652_110 Hb_000574_550--Hb_001652_110 Hb_000065_050 Hb_000065_050 Hb_000574_550--Hb_000065_050 Hb_000574_550--Hb_002571_090 Hb_003226_290 Hb_003226_290 Hb_000574_550--Hb_003226_290 Hb_000574_550--Hb_000296_060 Hb_002571_090--Hb_000205_340 Hb_002571_090--Hb_000065_050 Hb_002571_090--Hb_003551_030 Hb_012424_010--Hb_003551_030 Hb_012424_010--Hb_001987_010 Hb_012424_010--Hb_000205_340 Hb_003551_030--Hb_001987_010 Hb_001693_040 Hb_001693_040 Hb_003551_030--Hb_001693_040 Hb_003551_030--Hb_000205_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.955219 0.240093 0.1177

CAGE analysis