Hb_069783_020

Information

Type -
Description -
Location Contig69783: 3712-6737
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12980g
description hypothetical protein
nr
ID XP_012089461.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23412 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069783_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
2 Hb_187513_010 0.1008270522 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
3 Hb_003551_030 0.1285818699 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
4 Hb_000296_060 0.1328888758 - - -
5 Hb_012424_010 0.1439659129 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
6 Hb_001987_010 0.1726333937 - - -
7 Hb_000276_050 0.1749174604 - - -
8 Hb_001693_040 0.1776512595 - - -
9 Hb_008839_030 0.180710891 - - conserved hypothetical protein [Ricinus communis]
10 Hb_060455_010 0.1819987946 - - 50 kDa protein [Hevea brasiliensis]
11 Hb_000205_340 0.1968192359 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
12 Hb_012286_070 0.2005649623 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
13 Hb_000450_140 0.2005675909 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
14 Hb_020818_010 0.2006467375 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
15 Hb_070247_010 0.2007142916 - - hypothetical protein [Pseudomonas tolaasii]
16 Hb_010760_010 0.2010595553 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_001545_250 0.2019126607 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
18 Hb_000201_020 0.2019598047 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
19 Hb_000971_060 0.2022160285 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_001403_030 0.2028922423 - - -

Gene co-expression network

sample Hb_069783_020 Hb_069783_020 Hb_187513_010 Hb_187513_010 Hb_069783_020--Hb_187513_010 Hb_003551_030 Hb_003551_030 Hb_069783_020--Hb_003551_030 Hb_000296_060 Hb_000296_060 Hb_069783_020--Hb_000296_060 Hb_012424_010 Hb_012424_010 Hb_069783_020--Hb_012424_010 Hb_001987_010 Hb_001987_010 Hb_069783_020--Hb_001987_010 Hb_000276_050 Hb_000276_050 Hb_069783_020--Hb_000276_050 Hb_187513_010--Hb_000296_060 Hb_000574_550 Hb_000574_550 Hb_187513_010--Hb_000574_550 Hb_002571_090 Hb_002571_090 Hb_187513_010--Hb_002571_090 Hb_187513_010--Hb_012424_010 Hb_187513_010--Hb_003551_030 Hb_003551_030--Hb_001987_010 Hb_001693_040 Hb_001693_040 Hb_003551_030--Hb_001693_040 Hb_000205_340 Hb_000205_340 Hb_003551_030--Hb_000205_340 Hb_003551_030--Hb_012424_010 Hb_003551_030--Hb_000296_060 Hb_000296_060--Hb_002571_090 Hb_000296_060--Hb_000205_340 Hb_000296_060--Hb_012424_010 Hb_012424_010--Hb_001987_010 Hb_012424_010--Hb_000205_340 Hb_001987_010--Hb_001693_040 Hb_001987_010--Hb_000205_340 Hb_001987_010--Hb_000296_060 Hb_000276_050--Hb_003551_030 Hb_000276_050--Hb_000296_060 Hb_000276_050--Hb_187513_010 Hb_000276_050--Hb_000205_340 Hb_000276_050--Hb_012424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.45873 0.185107 0.139269

CAGE analysis