Hb_000276_050

Information

Type -
Description -
Location Contig276: 156620-166148
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000276_050 0.0 - - -
2 Hb_003551_030 0.1707166611 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
3 Hb_000296_060 0.1748511224 - - -
4 Hb_069783_020 0.1749174604 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_187513_010 0.1820479742 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
6 Hb_000205_340 0.1905287325 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
7 Hb_012424_010 0.1909701462 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_001987_010 0.1926415599 - - -
9 Hb_002571_090 0.2041427885 - - -
10 Hb_001693_040 0.2205375881 - - -
11 Hb_000446_060 0.2205618235 - - -
12 Hb_000574_550 0.253445467 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
13 Hb_177179_010 0.2633349213 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
14 Hb_005020_010 0.2743722736 - - -
15 Hb_000705_280 0.2758207754 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
16 Hb_025311_020 0.2793917686 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
17 Hb_006280_010 0.2807218385 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
18 Hb_003226_290 0.2842529388 - - catalytic, putative [Ricinus communis]
19 Hb_007177_010 0.2867896855 - - -
20 Hb_001545_210 0.2892889012 - - hypothetical protein JCGZ_11132 [Jatropha curcas]

Gene co-expression network

sample Hb_000276_050 Hb_000276_050 Hb_003551_030 Hb_003551_030 Hb_000276_050--Hb_003551_030 Hb_000296_060 Hb_000296_060 Hb_000276_050--Hb_000296_060 Hb_069783_020 Hb_069783_020 Hb_000276_050--Hb_069783_020 Hb_187513_010 Hb_187513_010 Hb_000276_050--Hb_187513_010 Hb_000205_340 Hb_000205_340 Hb_000276_050--Hb_000205_340 Hb_012424_010 Hb_012424_010 Hb_000276_050--Hb_012424_010 Hb_001987_010 Hb_001987_010 Hb_003551_030--Hb_001987_010 Hb_001693_040 Hb_001693_040 Hb_003551_030--Hb_001693_040 Hb_003551_030--Hb_000205_340 Hb_003551_030--Hb_069783_020 Hb_003551_030--Hb_012424_010 Hb_003551_030--Hb_000296_060 Hb_000296_060--Hb_187513_010 Hb_002571_090 Hb_002571_090 Hb_000296_060--Hb_002571_090 Hb_000296_060--Hb_069783_020 Hb_000296_060--Hb_000205_340 Hb_000296_060--Hb_012424_010 Hb_069783_020--Hb_187513_010 Hb_069783_020--Hb_012424_010 Hb_069783_020--Hb_001987_010 Hb_000574_550 Hb_000574_550 Hb_187513_010--Hb_000574_550 Hb_187513_010--Hb_002571_090 Hb_187513_010--Hb_012424_010 Hb_187513_010--Hb_003551_030 Hb_000205_340--Hb_001987_010 Hb_000205_340--Hb_002571_090 Hb_000205_340--Hb_012424_010 Hb_000205_340--Hb_001693_040 Hb_012424_010--Hb_001987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397602 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.61785 0.0928605 0.11422

CAGE analysis