Hb_003551_030

Information

Type -
Description -
Location Contig3551: 36740-38224
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03850g
description POPTRDRAFT_777050; hypothetical protein
nr
ID XP_002322629.1
description hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
swissprot
ID O64515
description Organic cation/carnitine transporter 2 OS=Arabidopsis thaliana GN=OCT2 PE=2 SV=1
trembl
ID B9IHT2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03850g PE=4 SV=1
Gene Ontology
ID GO:0016021
description organic cation carnitine transporter 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003551_030 0.0 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
2 Hb_001987_010 0.0456660038 - - -
3 Hb_001693_040 0.0932578548 - - -
4 Hb_000205_340 0.09868254 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
5 Hb_069783_020 0.1285818699 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
6 Hb_012424_010 0.1332892133 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
7 Hb_000296_060 0.1352906363 - - -
8 Hb_000276_050 0.1707166611 - - -
9 Hb_002571_090 0.1736042842 - - -
10 Hb_187513_010 0.17479796 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
11 Hb_010736_030 0.2450998503 - - -
12 Hb_143874_010 0.2641941871 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
13 Hb_060455_010 0.2664282436 - - 50 kDa protein [Hevea brasiliensis]
14 Hb_008839_030 0.2677538123 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000574_550 0.2717214982 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
16 Hb_000705_280 0.2799059664 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
17 Hb_025311_020 0.294542338 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
18 Hb_065943_010 0.3015959607 - - -
19 Hb_006157_050 0.3016935729 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000572_050 0.3018617007 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]

Gene co-expression network

sample Hb_003551_030 Hb_003551_030 Hb_001987_010 Hb_001987_010 Hb_003551_030--Hb_001987_010 Hb_001693_040 Hb_001693_040 Hb_003551_030--Hb_001693_040 Hb_000205_340 Hb_000205_340 Hb_003551_030--Hb_000205_340 Hb_069783_020 Hb_069783_020 Hb_003551_030--Hb_069783_020 Hb_012424_010 Hb_012424_010 Hb_003551_030--Hb_012424_010 Hb_000296_060 Hb_000296_060 Hb_003551_030--Hb_000296_060 Hb_001987_010--Hb_001693_040 Hb_001987_010--Hb_000205_340 Hb_001987_010--Hb_012424_010 Hb_001987_010--Hb_000296_060 Hb_001987_010--Hb_069783_020 Hb_001693_040--Hb_000205_340 Hb_001693_040--Hb_069783_020 Hb_001693_040--Hb_012424_010 Hb_001693_040--Hb_000296_060 Hb_002571_090 Hb_002571_090 Hb_000205_340--Hb_002571_090 Hb_000205_340--Hb_000296_060 Hb_000205_340--Hb_012424_010 Hb_187513_010 Hb_187513_010 Hb_069783_020--Hb_187513_010 Hb_069783_020--Hb_000296_060 Hb_069783_020--Hb_012424_010 Hb_000276_050 Hb_000276_050 Hb_069783_020--Hb_000276_050 Hb_012424_010--Hb_000296_060 Hb_012424_010--Hb_187513_010 Hb_000296_060--Hb_187513_010 Hb_000296_060--Hb_002571_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.233395 0.0198448 0.0519754

CAGE analysis