Hb_012424_010

Information

Type -
Description -
Location Contig12424: 27-5177
Sequence    

Annotation

kegg
ID tcc:TCM_012637
description hypothetical protein
nr
ID XP_012073065.1
description PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
swissprot
ID P27401
description Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2
trembl
ID A0A061FVJ1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_012637 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012424_010 0.0 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
2 Hb_003551_030 0.1332892133 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
3 Hb_069783_020 0.1439659129 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
4 Hb_000296_060 0.1473043261 - - -
5 Hb_001987_010 0.1585865354 - - -
6 Hb_187513_010 0.1591202101 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
7 Hb_000205_340 0.1611762933 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
8 Hb_002571_090 0.1835358494 - - -
9 Hb_001693_040 0.1887947726 - - -
10 Hb_000276_050 0.1909701462 - - -
11 Hb_000574_550 0.2431034338 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
12 Hb_009615_080 0.2514157374 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
13 Hb_025311_020 0.2539323426 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
14 Hb_000184_200 0.258057546 - - -
15 Hb_002513_050 0.2715195107 - - hypothetical protein F383_14794 [Gossypium arboreum]
16 Hb_008839_030 0.2783262203 - - conserved hypothetical protein [Ricinus communis]
17 Hb_060455_010 0.2785744434 - - 50 kDa protein [Hevea brasiliensis]
18 Hb_003226_290 0.2848862477 - - catalytic, putative [Ricinus communis]
19 Hb_000065_050 0.2925174269 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_012286_070 0.295161692 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]

Gene co-expression network

sample Hb_012424_010 Hb_012424_010 Hb_003551_030 Hb_003551_030 Hb_012424_010--Hb_003551_030 Hb_069783_020 Hb_069783_020 Hb_012424_010--Hb_069783_020 Hb_000296_060 Hb_000296_060 Hb_012424_010--Hb_000296_060 Hb_001987_010 Hb_001987_010 Hb_012424_010--Hb_001987_010 Hb_187513_010 Hb_187513_010 Hb_012424_010--Hb_187513_010 Hb_000205_340 Hb_000205_340 Hb_012424_010--Hb_000205_340 Hb_003551_030--Hb_001987_010 Hb_001693_040 Hb_001693_040 Hb_003551_030--Hb_001693_040 Hb_003551_030--Hb_000205_340 Hb_003551_030--Hb_069783_020 Hb_003551_030--Hb_000296_060 Hb_069783_020--Hb_187513_010 Hb_069783_020--Hb_000296_060 Hb_069783_020--Hb_001987_010 Hb_000276_050 Hb_000276_050 Hb_069783_020--Hb_000276_050 Hb_000296_060--Hb_187513_010 Hb_002571_090 Hb_002571_090 Hb_000296_060--Hb_002571_090 Hb_000296_060--Hb_000205_340 Hb_001987_010--Hb_001693_040 Hb_001987_010--Hb_000205_340 Hb_001987_010--Hb_000296_060 Hb_000574_550 Hb_000574_550 Hb_187513_010--Hb_000574_550 Hb_187513_010--Hb_002571_090 Hb_187513_010--Hb_003551_030 Hb_000205_340--Hb_002571_090 Hb_000205_340--Hb_001693_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00490065 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.135537 0.0187489 0.0251942

CAGE analysis