Hb_000160_100

Information

Type -
Description -
Location Contig160: 104984-106432
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14850g
description hypothetical protein
nr
ID XP_011021340.1
description PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
swissprot
ID O14197
description Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
trembl
ID U5GC98
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14850g PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_100 0.0 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
2 Hb_002675_120 0.1896864496 - - DNA-repair protein xrcc1, putative [Ricinus communis]
3 Hb_006683_030 0.2346134398 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_006683_010 0.2408474187 - - cell wall invertase [Manihot esculenta]
5 Hb_002849_150 0.2438755961 - - hypothetical protein JCGZ_14367 [Jatropha curcas]
6 Hb_002774_010 0.2506870073 - - -
7 Hb_041184_010 0.258111466 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_144004_010 0.2649631638 - - hypothetical protein JCGZ_01009 [Jatropha curcas]
9 Hb_125644_010 0.2699824412 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
10 Hb_000050_130 0.2733580909 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
11 Hb_001726_030 0.2753460825 - - Ferulic acid 5-hydroxylase 1 [Theobroma cacao]
12 Hb_188487_010 0.2783875571 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
13 Hb_005896_010 0.2831624343 - - -
14 Hb_001780_010 0.2873163144 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
15 Hb_001524_020 0.288098431 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
16 Hb_001652_110 0.2887900902 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
17 Hb_176979_010 0.3005626666 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_002774_040 0.3011861123 - - PREDICTED: annexin D1 [Jatropha curcas]
19 Hb_008749_090 0.305802517 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
20 Hb_003517_010 0.3060225448 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_100 Hb_000160_100 Hb_002675_120 Hb_002675_120 Hb_000160_100--Hb_002675_120 Hb_006683_030 Hb_006683_030 Hb_000160_100--Hb_006683_030 Hb_006683_010 Hb_006683_010 Hb_000160_100--Hb_006683_010 Hb_002849_150 Hb_002849_150 Hb_000160_100--Hb_002849_150 Hb_002774_010 Hb_002774_010 Hb_000160_100--Hb_002774_010 Hb_041184_010 Hb_041184_010 Hb_000160_100--Hb_041184_010 Hb_002675_120--Hb_006683_010 Hb_000050_130 Hb_000050_130 Hb_002675_120--Hb_000050_130 Hb_001652_110 Hb_001652_110 Hb_002675_120--Hb_001652_110 Hb_002675_120--Hb_006683_030 Hb_002675_120--Hb_002849_150 Hb_005896_010 Hb_005896_010 Hb_006683_030--Hb_005896_010 Hb_002774_040 Hb_002774_040 Hb_006683_030--Hb_002774_040 Hb_002656_010 Hb_002656_010 Hb_006683_030--Hb_002656_010 Hb_008749_090 Hb_008749_090 Hb_006683_030--Hb_008749_090 Hb_006683_010--Hb_000050_130 Hb_006683_010--Hb_001652_110 Hb_008779_010 Hb_008779_010 Hb_006683_010--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_006683_010--Hb_008643_010 Hb_001004_100 Hb_001004_100 Hb_002849_150--Hb_001004_100 Hb_107201_010 Hb_107201_010 Hb_002849_150--Hb_107201_010 Hb_000135_050 Hb_000135_050 Hb_002849_150--Hb_000135_050 Hb_000922_010 Hb_000922_010 Hb_002849_150--Hb_000922_010 Hb_012753_190 Hb_012753_190 Hb_002849_150--Hb_012753_190 Hb_029510_110 Hb_029510_110 Hb_002849_150--Hb_029510_110 Hb_001524_020 Hb_001524_020 Hb_002774_010--Hb_001524_020 Hb_001780_010 Hb_001780_010 Hb_002774_010--Hb_001780_010 Hb_188487_010 Hb_188487_010 Hb_002774_010--Hb_188487_010 Hb_000920_070 Hb_000920_070 Hb_002774_010--Hb_000920_070 Hb_155556_010 Hb_155556_010 Hb_002774_010--Hb_155556_010 Hb_159957_020 Hb_159957_020 Hb_002774_010--Hb_159957_020 Hb_041184_010--Hb_188487_010 Hb_041184_010--Hb_002849_150 Hb_041184_010--Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_041184_010--Hb_003517_010 Hb_041184_010--Hb_002774_010 Hb_006916_190 Hb_006916_190 Hb_041184_010--Hb_006916_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.402177 0.0224065 0.010525 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0325012 0 1.19935 3.84959 0.694366

CAGE analysis