Hb_001524_020

Information

Type -
Description -
Location Contig1524: 23635-24201
Sequence    

Annotation

kegg
ID rcu:RCOM_0662440
description Pollen-specific protein C13 precursor, putative
nr
ID XP_002533139.1
description Pollen-specific protein C13 precursor, putative [Ricinus communis]
swissprot
ID Q9LX15
description Protein DOWNSTREAM OF FLC OS=Arabidopsis thaliana GN=DFC PE=2 SV=1
trembl
ID B9T4H0
description Pollen-specific protein C13, putative OS=Ricinus communis GN=RCOM_0662440 PE=4 SV=1
Gene Ontology
ID GO:0005615
description pollen-specific protein c13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001524_020 0.0 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
2 Hb_001780_010 0.1176407224 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
3 Hb_002774_010 0.1259568361 - - -
4 Hb_188487_010 0.1688701657 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
5 Hb_155556_010 0.1800209709 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
6 Hb_000920_070 0.1841169667 - - -
7 Hb_010810_070 0.2089649869 - - serine/threonine kinase, putative [Ricinus communis]
8 Hb_002092_040 0.2576868633 - - PREDICTED: protein YLS3 [Jatropha curcas]
9 Hb_041184_010 0.2584350705 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_019299_050 0.2674050629 - - -
11 Hb_005625_050 0.2674186551 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
12 Hb_007757_090 0.2678235207 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
13 Hb_006261_010 0.2683133951 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
14 Hb_003197_060 0.2696043218 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
15 Hb_002675_120 0.2711503996 - - DNA-repair protein xrcc1, putative [Ricinus communis]
16 Hb_000967_030 0.2716148543 - - -
17 Hb_000946_020 0.2734151026 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
18 Hb_000159_030 0.2751773067 - - putative glycosyltransferase, partial [Aralia elata]
19 Hb_159957_020 0.2755750958 - - -
20 Hb_169597_010 0.279504542 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001524_020 Hb_001524_020 Hb_001780_010 Hb_001780_010 Hb_001524_020--Hb_001780_010 Hb_002774_010 Hb_002774_010 Hb_001524_020--Hb_002774_010 Hb_188487_010 Hb_188487_010 Hb_001524_020--Hb_188487_010 Hb_155556_010 Hb_155556_010 Hb_001524_020--Hb_155556_010 Hb_000920_070 Hb_000920_070 Hb_001524_020--Hb_000920_070 Hb_010810_070 Hb_010810_070 Hb_001524_020--Hb_010810_070 Hb_001780_010--Hb_155556_010 Hb_001780_010--Hb_000920_070 Hb_001780_010--Hb_002774_010 Hb_001780_010--Hb_188487_010 Hb_002092_040 Hb_002092_040 Hb_001780_010--Hb_002092_040 Hb_002774_010--Hb_188487_010 Hb_002774_010--Hb_000920_070 Hb_002774_010--Hb_155556_010 Hb_159957_020 Hb_159957_020 Hb_002774_010--Hb_159957_020 Hb_188487_010--Hb_155556_010 Hb_188487_010--Hb_000920_070 Hb_041184_010 Hb_041184_010 Hb_188487_010--Hb_041184_010 Hb_155556_010--Hb_000920_070 Hb_012071_010 Hb_012071_010 Hb_155556_010--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_155556_010--Hb_012295_020 Hb_001519_210 Hb_001519_210 Hb_155556_010--Hb_001519_210 Hb_000920_070--Hb_010810_070 Hb_095835_010 Hb_095835_010 Hb_000920_070--Hb_095835_010 Hb_057638_010 Hb_057638_010 Hb_000920_070--Hb_057638_010 Hb_003376_280 Hb_003376_280 Hb_010810_070--Hb_003376_280 Hb_003780_010 Hb_003780_010 Hb_010810_070--Hb_003780_010 Hb_000190_130 Hb_000190_130 Hb_010810_070--Hb_000190_130 Hb_093039_010 Hb_093039_010 Hb_010810_070--Hb_093039_010 Hb_000574_490 Hb_000574_490 Hb_010810_070--Hb_000574_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0769854 0 0 0 0 0.215784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.67492 8.43065 4.10525

CAGE analysis