Hb_001780_010

Information

Type -
Description -
Location Contig1780: 652-1134
Sequence    

Annotation

kegg
ID cic:CICLE_v10006597mg
description hypothetical protein
nr
ID XP_006421689.1
description hypothetical protein CICLE_v10006597mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4U6Q5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006597mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10006597mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_010 0.0 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
2 Hb_155556_010 0.0901320328 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
3 Hb_001524_020 0.1176407224 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
4 Hb_000920_070 0.1300895459 - - -
5 Hb_002774_010 0.1341294855 - - -
6 Hb_188487_010 0.1477246437 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
7 Hb_002092_040 0.2043581098 - - PREDICTED: protein YLS3 [Jatropha curcas]
8 Hb_010810_070 0.2118586594 - - serine/threonine kinase, putative [Ricinus communis]
9 Hb_012071_010 0.2248935295 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_012295_020 0.2326603534 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
11 Hb_095835_010 0.2416544455 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
12 Hb_003197_060 0.2643998355 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
13 Hb_001652_110 0.2660352428 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
14 Hb_000764_040 0.2684131504 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
15 Hb_001519_210 0.2699728243 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
16 Hb_018609_030 0.2753813396 - - conserved hypothetical protein [Ricinus communis]
17 Hb_128531_010 0.277742388 - - phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_041184_010 0.2802549766 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_057638_010 0.2805018883 - - PREDICTED: uncharacterized protein LOC105637008 [Jatropha curcas]
20 Hb_000946_020 0.2805259657 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]

Gene co-expression network

sample Hb_001780_010 Hb_001780_010 Hb_155556_010 Hb_155556_010 Hb_001780_010--Hb_155556_010 Hb_001524_020 Hb_001524_020 Hb_001780_010--Hb_001524_020 Hb_000920_070 Hb_000920_070 Hb_001780_010--Hb_000920_070 Hb_002774_010 Hb_002774_010 Hb_001780_010--Hb_002774_010 Hb_188487_010 Hb_188487_010 Hb_001780_010--Hb_188487_010 Hb_002092_040 Hb_002092_040 Hb_001780_010--Hb_002092_040 Hb_155556_010--Hb_000920_070 Hb_012071_010 Hb_012071_010 Hb_155556_010--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_155556_010--Hb_012295_020 Hb_155556_010--Hb_001524_020 Hb_001519_210 Hb_001519_210 Hb_155556_010--Hb_001519_210 Hb_001524_020--Hb_002774_010 Hb_001524_020--Hb_188487_010 Hb_001524_020--Hb_000920_070 Hb_010810_070 Hb_010810_070 Hb_001524_020--Hb_010810_070 Hb_000920_070--Hb_010810_070 Hb_095835_010 Hb_095835_010 Hb_000920_070--Hb_095835_010 Hb_057638_010 Hb_057638_010 Hb_000920_070--Hb_057638_010 Hb_002774_010--Hb_188487_010 Hb_002774_010--Hb_000920_070 Hb_002774_010--Hb_155556_010 Hb_159957_020 Hb_159957_020 Hb_002774_010--Hb_159957_020 Hb_188487_010--Hb_155556_010 Hb_188487_010--Hb_000920_070 Hb_041184_010 Hb_041184_010 Hb_188487_010--Hb_041184_010 Hb_018609_030 Hb_018609_030 Hb_002092_040--Hb_018609_030 Hb_002092_040--Hb_155556_010 Hb_002092_040--Hb_012071_010 Hb_002092_040--Hb_012295_020 Hb_001652_110 Hb_001652_110 Hb_002092_040--Hb_001652_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.200489 0.706774 0.441829

CAGE analysis