Hb_018609_030

Information

Type -
Description -
Location Contig18609: 11974-21580
Sequence    

Annotation

kegg
ID rcu:RCOM_1014140
description hypothetical protein
nr
ID XP_002522549.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S980
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1014140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018609_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002092_040 0.0977984168 - - PREDICTED: protein YLS3 [Jatropha curcas]
3 Hb_012071_010 0.2566010133 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_155556_010 0.2598786454 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
5 Hb_012295_020 0.2599965337 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
6 Hb_001780_010 0.2753813396 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
7 Hb_001304_120 0.2802185903 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
8 Hb_000065_050 0.2807473547 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_005007_040 0.2847161337 - - hypothetical protein VITISV_032357 [Vitis vinifera]
10 Hb_001652_110 0.2862683375 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
11 Hb_014324_010 0.2924177492 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
12 Hb_020763_010 0.3033531445 - - polyamine oxidase, putative [Ricinus communis]
13 Hb_001045_110 0.3044588586 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
14 Hb_099990_010 0.30541055 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Vitis vinifera]
15 Hb_001519_210 0.3116319722 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
16 Hb_000920_070 0.3133719713 - - -
17 Hb_001524_020 0.318159955 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
18 Hb_000216_030 0.319384766 - - aldehyde oxidase, putative [Ricinus communis]
19 Hb_000327_370 0.3237640363 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_188487_010 0.3246170261 - - hypothetical protein JCGZ_24382 [Jatropha curcas]

Gene co-expression network

sample Hb_018609_030 Hb_018609_030 Hb_002092_040 Hb_002092_040 Hb_018609_030--Hb_002092_040 Hb_012071_010 Hb_012071_010 Hb_018609_030--Hb_012071_010 Hb_155556_010 Hb_155556_010 Hb_018609_030--Hb_155556_010 Hb_012295_020 Hb_012295_020 Hb_018609_030--Hb_012295_020 Hb_001780_010 Hb_001780_010 Hb_018609_030--Hb_001780_010 Hb_001304_120 Hb_001304_120 Hb_018609_030--Hb_001304_120 Hb_002092_040--Hb_155556_010 Hb_002092_040--Hb_012071_010 Hb_002092_040--Hb_012295_020 Hb_002092_040--Hb_001780_010 Hb_001652_110 Hb_001652_110 Hb_002092_040--Hb_001652_110 Hb_012071_010--Hb_012295_020 Hb_000065_050 Hb_000065_050 Hb_012071_010--Hb_000065_050 Hb_032531_010 Hb_032531_010 Hb_012071_010--Hb_032531_010 Hb_001519_210 Hb_001519_210 Hb_012071_010--Hb_001519_210 Hb_012071_010--Hb_155556_010 Hb_050334_010 Hb_050334_010 Hb_012071_010--Hb_050334_010 Hb_155556_010--Hb_001780_010 Hb_000920_070 Hb_000920_070 Hb_155556_010--Hb_000920_070 Hb_155556_010--Hb_012295_020 Hb_001524_020 Hb_001524_020 Hb_155556_010--Hb_001524_020 Hb_155556_010--Hb_001519_210 Hb_012295_020--Hb_000065_050 Hb_012295_020--Hb_032531_010 Hb_012295_020--Hb_001519_210 Hb_012295_020--Hb_050334_010 Hb_001780_010--Hb_001524_020 Hb_001780_010--Hb_000920_070 Hb_002774_010 Hb_002774_010 Hb_001780_010--Hb_002774_010 Hb_188487_010 Hb_188487_010 Hb_001780_010--Hb_188487_010 Hb_005007_040 Hb_005007_040 Hb_001304_120--Hb_005007_040 Hb_000144_040 Hb_000144_040 Hb_001304_120--Hb_000144_040 Hb_001304_120--Hb_000065_050 Hb_001304_120--Hb_012295_020 Hb_001304_120--Hb_012071_010 Hb_001304_120--Hb_002092_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00877862 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0201997 0.0292701 0.0225325

CAGE analysis