Hb_005007_040

Information

Type -
Description -
Location Contig5007: 27871-31987
Sequence    

Annotation

kegg
ID cmo:103499392
description uncharacterized LOC103499392
nr
ID CAN63950.1
description hypothetical protein VITISV_032357 [Vitis vinifera]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A5BX03
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein VITISV_032357

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005007_040 0.0 - - hypothetical protein VITISV_032357 [Vitis vinifera]
2 Hb_000065_050 0.1871806621 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_001652_110 0.1994637016 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
4 Hb_001304_120 0.2130757418 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
5 Hb_000574_550 0.2225721568 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
6 Hb_012071_010 0.2317930757 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
7 Hb_012295_020 0.2339802293 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
8 Hb_002571_090 0.2407838945 - - -
9 Hb_002092_040 0.2416498502 - - PREDICTED: protein YLS3 [Jatropha curcas]
10 Hb_003226_290 0.253185142 - - catalytic, putative [Ricinus communis]
11 Hb_002675_120 0.2718366724 - - DNA-repair protein xrcc1, putative [Ricinus communis]
12 Hb_000296_060 0.2733322715 - - -
13 Hb_177179_010 0.2780341823 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
14 Hb_018609_030 0.2847161337 - - conserved hypothetical protein [Ricinus communis]
15 Hb_032531_010 0.2880999983 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_006683_010 0.2984498144 - - cell wall invertase [Manihot esculenta]
17 Hb_076795_010 0.3037163731 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
18 Hb_187513_010 0.3042590214 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
19 Hb_012098_190 0.3049547139 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_025311_020 0.3078289287 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]

Gene co-expression network

sample Hb_005007_040 Hb_005007_040 Hb_000065_050 Hb_000065_050 Hb_005007_040--Hb_000065_050 Hb_001652_110 Hb_001652_110 Hb_005007_040--Hb_001652_110 Hb_001304_120 Hb_001304_120 Hb_005007_040--Hb_001304_120 Hb_000574_550 Hb_000574_550 Hb_005007_040--Hb_000574_550 Hb_012071_010 Hb_012071_010 Hb_005007_040--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_005007_040--Hb_012295_020 Hb_000065_050--Hb_012071_010 Hb_000065_050--Hb_012295_020 Hb_000065_050--Hb_001652_110 Hb_002571_090 Hb_002571_090 Hb_000065_050--Hb_002571_090 Hb_000065_050--Hb_000574_550 Hb_032531_010 Hb_032531_010 Hb_000065_050--Hb_032531_010 Hb_001652_110--Hb_000574_550 Hb_001652_110--Hb_012071_010 Hb_006683_010 Hb_006683_010 Hb_001652_110--Hb_006683_010 Hb_001652_110--Hb_012295_020 Hb_000144_040 Hb_000144_040 Hb_001304_120--Hb_000144_040 Hb_001304_120--Hb_000065_050 Hb_001304_120--Hb_012295_020 Hb_001304_120--Hb_012071_010 Hb_002092_040 Hb_002092_040 Hb_001304_120--Hb_002092_040 Hb_187513_010 Hb_187513_010 Hb_000574_550--Hb_187513_010 Hb_000574_550--Hb_002571_090 Hb_003226_290 Hb_003226_290 Hb_000574_550--Hb_003226_290 Hb_000296_060 Hb_000296_060 Hb_000574_550--Hb_000296_060 Hb_012071_010--Hb_012295_020 Hb_012071_010--Hb_032531_010 Hb_001519_210 Hb_001519_210 Hb_012071_010--Hb_001519_210 Hb_155556_010 Hb_155556_010 Hb_012071_010--Hb_155556_010 Hb_050334_010 Hb_050334_010 Hb_012071_010--Hb_050334_010 Hb_012295_020--Hb_032531_010 Hb_012295_020--Hb_001519_210 Hb_012295_020--Hb_050334_010 Hb_012295_020--Hb_155556_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00343 0.00658004 0.00868404 0.0207772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.254289 0.193285 0.124136

CAGE analysis