Hb_005896_010

Information

Type -
Description -
Location Contig5896: 19139-22489
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005896_010 0.0 - - -
2 Hb_006683_030 0.1444382936 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_002656_010 0.2098588916 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
4 Hb_159198_010 0.2484409684 - - hypothetical protein VITISV_033829 [Vitis vinifera]
5 Hb_000840_040 0.2586729276 - - monoxygenase, putative [Ricinus communis]
6 Hb_008749_090 0.259100285 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
7 Hb_003517_010 0.2644728686 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
8 Hb_000067_010 0.2680756313 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
9 Hb_102011_010 0.2724545566 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_149515_010 0.2788948428 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
11 Hb_038044_020 0.2791438955 - - -
12 Hb_012788_010 0.2807211205 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_003206_080 0.2821426841 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
14 Hb_000160_100 0.2831624343 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
15 Hb_002774_040 0.2853774168 - - PREDICTED: annexin D1 [Jatropha curcas]
16 Hb_144004_010 0.2906703227 - - hypothetical protein JCGZ_01009 [Jatropha curcas]
17 Hb_096811_010 0.2969430913 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
18 Hb_000475_050 0.2969918219 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_006916_190 0.2974610797 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_008553_010 0.3022511243 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_005896_010 Hb_005896_010 Hb_006683_030 Hb_006683_030 Hb_005896_010--Hb_006683_030 Hb_002656_010 Hb_002656_010 Hb_005896_010--Hb_002656_010 Hb_159198_010 Hb_159198_010 Hb_005896_010--Hb_159198_010 Hb_000840_040 Hb_000840_040 Hb_005896_010--Hb_000840_040 Hb_008749_090 Hb_008749_090 Hb_005896_010--Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_005896_010--Hb_003517_010 Hb_000160_100 Hb_000160_100 Hb_006683_030--Hb_000160_100 Hb_002774_040 Hb_002774_040 Hb_006683_030--Hb_002774_040 Hb_002675_120 Hb_002675_120 Hb_006683_030--Hb_002675_120 Hb_006683_030--Hb_002656_010 Hb_006683_030--Hb_008749_090 Hb_149515_010 Hb_149515_010 Hb_002656_010--Hb_149515_010 Hb_000215_340 Hb_000215_340 Hb_002656_010--Hb_000215_340 Hb_002656_010--Hb_000840_040 Hb_001373_010 Hb_001373_010 Hb_002656_010--Hb_001373_010 Hb_002656_010--Hb_159198_010 Hb_159198_010--Hb_000840_040 Hb_159198_010--Hb_149515_010 Hb_159198_010--Hb_003517_010 Hb_000067_030 Hb_000067_030 Hb_159198_010--Hb_000067_030 Hb_000141_010 Hb_000141_010 Hb_159198_010--Hb_000141_010 Hb_002740_170 Hb_002740_170 Hb_159198_010--Hb_002740_170 Hb_003185_100 Hb_003185_100 Hb_000840_040--Hb_003185_100 Hb_000840_040--Hb_149515_010 Hb_000840_040--Hb_000141_010 Hb_002043_010 Hb_002043_010 Hb_000840_040--Hb_002043_010 Hb_001485_010 Hb_001485_010 Hb_000840_040--Hb_001485_010 Hb_008749_090--Hb_003517_010 Hb_008749_090--Hb_149515_010 Hb_006916_190 Hb_006916_190 Hb_008749_090--Hb_006916_190 Hb_001780_130 Hb_001780_130 Hb_008749_090--Hb_001780_130 Hb_000343_100 Hb_000343_100 Hb_008749_090--Hb_000343_100 Hb_000816_020 Hb_000816_020 Hb_008749_090--Hb_000816_020 Hb_003517_010--Hb_149515_010 Hb_005389_190 Hb_005389_190 Hb_003517_010--Hb_005389_190 Hb_003517_010--Hb_000816_020 Hb_006096_020 Hb_006096_020 Hb_003517_010--Hb_006096_020 Hb_029904_010 Hb_029904_010 Hb_003517_010--Hb_029904_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147538 1.32157 0.0107957 0.0210449 0.0533087 0.168831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.01853 2.5774 0.927927

CAGE analysis