Hb_001780_130

Information

Type -
Description -
Location Contig1780: 111072-112717
Sequence    

Annotation

kegg
ID pxb:103929824
description uncharacterized LOC103929824
nr
ID KDP46573.1
description hypothetical protein JCGZ_08545 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08545 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17125: 110455-111430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_130 0.0 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
2 Hb_000473_030 0.1390542217 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
3 Hb_000330_150 0.1620462887 - - PREDICTED: dihydroflavonol-4-reductase-like [Jatropha curcas]
4 Hb_011360_060 0.1738063303 - - glycogen phosphorylase, putative [Ricinus communis]
5 Hb_011853_010 0.1802459059 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
6 Hb_046998_010 0.1922930861 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_000173_260 0.1950572267 - - hypothetical protein L484_010046 [Morus notabilis]
8 Hb_000823_010 0.1952939486 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
9 Hb_000347_110 0.19600616 - - BnaA05g25330D [Brassica napus]
10 Hb_000019_170 0.1990719707 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
11 Hb_002026_070 0.201403905 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
12 Hb_085187_010 0.2051945144 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_008749_090 0.2056596019 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
14 Hb_006816_230 0.205927229 - - protein disulfide isomerase, putative [Ricinus communis]
15 Hb_000702_060 0.2063968054 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000365_200 0.2064668611 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
17 Hb_000337_010 0.2066816057 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
18 Hb_000181_020 0.2072400822 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
19 Hb_000054_110 0.2075873587 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
20 Hb_000625_030 0.2077749034 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_001780_130 Hb_001780_130 Hb_000473_030 Hb_000473_030 Hb_001780_130--Hb_000473_030 Hb_000330_150 Hb_000330_150 Hb_001780_130--Hb_000330_150 Hb_011360_060 Hb_011360_060 Hb_001780_130--Hb_011360_060 Hb_011853_010 Hb_011853_010 Hb_001780_130--Hb_011853_010 Hb_046998_010 Hb_046998_010 Hb_001780_130--Hb_046998_010 Hb_000173_260 Hb_000173_260 Hb_001780_130--Hb_000173_260 Hb_000019_170 Hb_000019_170 Hb_000473_030--Hb_000019_170 Hb_000590_070 Hb_000590_070 Hb_000473_030--Hb_000590_070 Hb_007317_020 Hb_007317_020 Hb_000473_030--Hb_007317_020 Hb_000365_200 Hb_000365_200 Hb_000473_030--Hb_000365_200 Hb_009535_030 Hb_009535_030 Hb_000473_030--Hb_009535_030 Hb_005181_060 Hb_005181_060 Hb_000473_030--Hb_005181_060 Hb_002026_070 Hb_002026_070 Hb_000330_150--Hb_002026_070 Hb_169586_010 Hb_169586_010 Hb_000330_150--Hb_169586_010 Hb_002631_130 Hb_002631_130 Hb_000330_150--Hb_002631_130 Hb_014497_060 Hb_014497_060 Hb_000330_150--Hb_014497_060 Hb_000330_150--Hb_000473_030 Hb_000337_010 Hb_000337_010 Hb_000330_150--Hb_000337_010 Hb_011360_060--Hb_000173_260 Hb_000347_110 Hb_000347_110 Hb_011360_060--Hb_000347_110 Hb_000181_020 Hb_000181_020 Hb_011360_060--Hb_000181_020 Hb_011360_060--Hb_002026_070 Hb_000041_060 Hb_000041_060 Hb_011360_060--Hb_000041_060 Hb_000625_030 Hb_000625_030 Hb_011360_060--Hb_000625_030 Hb_006700_040 Hb_006700_040 Hb_011853_010--Hb_006700_040 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_000922_260 Hb_000922_260 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180 Hb_012033_010 Hb_012033_010 Hb_046998_010--Hb_012033_010 Hb_002893_190 Hb_002893_190 Hb_046998_010--Hb_002893_190 Hb_002811_020 Hb_002811_020 Hb_046998_010--Hb_002811_020 Hb_005214_080 Hb_005214_080 Hb_046998_010--Hb_005214_080 Hb_046998_010--Hb_011853_010 Hb_004096_220 Hb_004096_220 Hb_046998_010--Hb_004096_220 Hb_000173_260--Hb_000347_110 Hb_004041_100 Hb_004041_100 Hb_000173_260--Hb_004041_100 Hb_000173_260--Hb_000625_030 Hb_002272_230 Hb_002272_230 Hb_000173_260--Hb_002272_230 Hb_000173_260--Hb_000181_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204202 1.65957 1.76555 2.08445 1.32103 0.23957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207613 0.16331 1.33538 7.17266 3.30856

CAGE analysis