Hb_005214_080

Information

Type -
Description -
Location Contig5214: 60994-61978
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_046998_010 0.1663081991 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_001141_040 0.1702880044 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
4 Hb_002888_060 0.1926849161 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
5 Hb_011853_010 0.1959643852 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
6 Hb_007951_070 0.1976527327 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
7 Hb_000445_030 0.1984260385 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
8 Hb_004319_060 0.2037743139 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
9 Hb_000054_110 0.2046708413 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
10 Hb_021854_020 0.2077690106 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
11 Hb_007130_010 0.2086988758 - - -
12 Hb_101449_010 0.2092328203 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
13 Hb_000442_170 0.2103410986 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_008033_060 0.2154709029 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
15 Hb_007237_010 0.2161995928 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005731_150 0.218429072 - - PREDICTED: uncharacterized protein LOC105630360 [Jatropha curcas]
17 Hb_021443_050 0.2186434789 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000594_130 0.2190942985 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000191_100 0.2196339819 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000032_600 0.220410918 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_005214_080 Hb_005214_080 Hb_046998_010 Hb_046998_010 Hb_005214_080--Hb_046998_010 Hb_001141_040 Hb_001141_040 Hb_005214_080--Hb_001141_040 Hb_002888_060 Hb_002888_060 Hb_005214_080--Hb_002888_060 Hb_011853_010 Hb_011853_010 Hb_005214_080--Hb_011853_010 Hb_007951_070 Hb_007951_070 Hb_005214_080--Hb_007951_070 Hb_000445_030 Hb_000445_030 Hb_005214_080--Hb_000445_030 Hb_012033_010 Hb_012033_010 Hb_046998_010--Hb_012033_010 Hb_002893_190 Hb_002893_190 Hb_046998_010--Hb_002893_190 Hb_002811_020 Hb_002811_020 Hb_046998_010--Hb_002811_020 Hb_046998_010--Hb_011853_010 Hb_004096_220 Hb_004096_220 Hb_046998_010--Hb_004096_220 Hb_001141_040--Hb_002888_060 Hb_000191_100 Hb_000191_100 Hb_001141_040--Hb_000191_100 Hb_005568_050 Hb_005568_050 Hb_001141_040--Hb_005568_050 Hb_001141_040--Hb_002811_020 Hb_000442_170 Hb_000442_170 Hb_001141_040--Hb_000442_170 Hb_000776_020 Hb_000776_020 Hb_001141_040--Hb_000776_020 Hb_001677_230 Hb_001677_230 Hb_002888_060--Hb_001677_230 Hb_002888_060--Hb_000191_100 Hb_001496_120 Hb_001496_120 Hb_002888_060--Hb_001496_120 Hb_001963_110 Hb_001963_110 Hb_002888_060--Hb_001963_110 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300 Hb_006700_040 Hb_006700_040 Hb_011853_010--Hb_006700_040 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_000922_260 Hb_000922_260 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180 Hb_000120_870 Hb_000120_870 Hb_007951_070--Hb_000120_870 Hb_007237_010 Hb_007237_010 Hb_007951_070--Hb_007237_010 Hb_000116_330 Hb_000116_330 Hb_007951_070--Hb_000116_330 Hb_007951_070--Hb_001141_040 Hb_008033_060 Hb_008033_060 Hb_007951_070--Hb_008033_060 Hb_018616_040 Hb_018616_040 Hb_007951_070--Hb_018616_040 Hb_003640_010 Hb_003640_010 Hb_000445_030--Hb_003640_010 Hb_002622_010 Hb_002622_010 Hb_000445_030--Hb_002622_010 Hb_029576_080 Hb_029576_080 Hb_000445_030--Hb_029576_080 Hb_001660_050 Hb_001660_050 Hb_000445_030--Hb_001660_050 Hb_003085_080 Hb_003085_080 Hb_000445_030--Hb_003085_080 Hb_013848_030 Hb_013848_030 Hb_000445_030--Hb_013848_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.372359 0.368779 0.245715 0.0874286 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0850428 0.147687 0.664559 0.816582

CAGE analysis