Hb_046998_010

Information

Type desease resistance
Description Gene Name: LRR_4
Location Contig46998: 1081-2685
Sequence    

Annotation

kegg
ID rcu:RCOM_0024480
description Disease resistance protein RPM1, putative
nr
ID XP_002527910.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SPJ1
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046998_010 0.0 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_012033_010 0.1414699297 - - PREDICTED: histone H1.2-like [Jatropha curcas]
3 Hb_002893_190 0.1566502687 - - unnamed protein product [Coffea canephora]
4 Hb_002811_020 0.1660129048 - - Cysteine synthase [Morus notabilis]
5 Hb_005214_080 0.1663081991 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011853_010 0.170805704 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
7 Hb_004096_220 0.1750440687 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
8 Hb_001141_040 0.1786445142 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
9 Hb_002888_060 0.1787578229 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
10 Hb_001307_200 0.1811009157 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
11 Hb_001268_300 0.1853720744 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001821_060 0.1865639209 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
13 Hb_000473_030 0.1884858221 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
14 Hb_000594_130 0.1894777407 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_153257_010 0.1895455914 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
16 Hb_009193_010 0.1911126801 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_001780_130 0.1922930861 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
18 Hb_009193_060 0.1932183886 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
19 Hb_001689_070 0.1933679105 - - cytochrome P450, putative [Ricinus communis]
20 Hb_005568_050 0.1935582689 - - ascorbate peroxidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_046998_010 Hb_046998_010 Hb_012033_010 Hb_012033_010 Hb_046998_010--Hb_012033_010 Hb_002893_190 Hb_002893_190 Hb_046998_010--Hb_002893_190 Hb_002811_020 Hb_002811_020 Hb_046998_010--Hb_002811_020 Hb_005214_080 Hb_005214_080 Hb_046998_010--Hb_005214_080 Hb_011853_010 Hb_011853_010 Hb_046998_010--Hb_011853_010 Hb_004096_220 Hb_004096_220 Hb_046998_010--Hb_004096_220 Hb_001821_060 Hb_001821_060 Hb_012033_010--Hb_001821_060 Hb_012033_010--Hb_004096_220 Hb_000256_160 Hb_000256_160 Hb_012033_010--Hb_000256_160 Hb_009193_010 Hb_009193_010 Hb_012033_010--Hb_009193_010 Hb_013968_010 Hb_013968_010 Hb_012033_010--Hb_013968_010 Hb_002888_040 Hb_002888_040 Hb_012033_010--Hb_002888_040 Hb_003106_110 Hb_003106_110 Hb_002893_190--Hb_003106_110 Hb_015306_010 Hb_015306_010 Hb_002893_190--Hb_015306_010 Hb_001689_070 Hb_001689_070 Hb_002893_190--Hb_001689_070 Hb_006469_090 Hb_006469_090 Hb_002893_190--Hb_006469_090 Hb_002893_190--Hb_012033_010 Hb_002893_190--Hb_002811_020 Hb_003842_010 Hb_003842_010 Hb_002811_020--Hb_003842_010 Hb_005523_050 Hb_005523_050 Hb_002811_020--Hb_005523_050 Hb_011537_020 Hb_011537_020 Hb_002811_020--Hb_011537_020 Hb_000215_250 Hb_000215_250 Hb_002811_020--Hb_000215_250 Hb_001018_080 Hb_001018_080 Hb_002811_020--Hb_001018_080 Hb_003085_080 Hb_003085_080 Hb_002811_020--Hb_003085_080 Hb_001141_040 Hb_001141_040 Hb_005214_080--Hb_001141_040 Hb_002888_060 Hb_002888_060 Hb_005214_080--Hb_002888_060 Hb_005214_080--Hb_011853_010 Hb_007951_070 Hb_007951_070 Hb_005214_080--Hb_007951_070 Hb_000445_030 Hb_000445_030 Hb_005214_080--Hb_000445_030 Hb_006700_040 Hb_006700_040 Hb_011853_010--Hb_006700_040 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_000922_260 Hb_000922_260 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180 Hb_004096_220--Hb_001307_200 Hb_000261_310 Hb_000261_310 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221185 3.82832 5.2781 3.62321 2.20028 0.131095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.3179 0.613905 0.42825 9.96543 9.44397

CAGE analysis