Hb_008749_090

Information

Type -
Description -
Location Contig8749: 68300-69414
Sequence    

Annotation

kegg
ID cic:CICLE_v10017161mg
description hypothetical protein
nr
ID XP_006448278.1
description hypothetical protein CICLE_v10017161mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TM07
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017161mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61245: 68149-78848 , PASA_asmbl_61246: 68149-78598
cDNA
(Sanger)
(ID:Location)		 014_F01.ab1: 68513-78848

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008749_090 0.0 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
2 Hb_003517_010 0.1759125592 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
3 Hb_149515_010 0.1806250729 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
4 Hb_006916_190 0.2045521779 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001780_130 0.2056596019 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
6 Hb_000343_100 0.2059167214 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
7 Hb_000816_020 0.2132647664 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
8 Hb_008145_010 0.2155061218 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_001123_010 0.2192502405 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004800_220 0.2226283765 - - PREDICTED: random slug protein 5 [Jatropha curcas]
11 Hb_000216_030 0.2268452951 - - aldehyde oxidase, putative [Ricinus communis]
12 Hb_000138_020 0.2296433104 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
13 Hb_003517_020 0.2312285024 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
14 Hb_011360_060 0.2313479244 - - glycogen phosphorylase, putative [Ricinus communis]
15 Hb_002640_040 0.2323474853 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_096811_010 0.2325154914 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
17 Hb_041184_010 0.2337151389 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_012553_020 0.2364442587 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
19 Hb_012753_190 0.2372573731 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
20 Hb_000347_110 0.2378270563 - - BnaA05g25330D [Brassica napus]

Gene co-expression network

sample Hb_008749_090 Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_008749_090--Hb_003517_010 Hb_149515_010 Hb_149515_010 Hb_008749_090--Hb_149515_010 Hb_006916_190 Hb_006916_190 Hb_008749_090--Hb_006916_190 Hb_001780_130 Hb_001780_130 Hb_008749_090--Hb_001780_130 Hb_000343_100 Hb_000343_100 Hb_008749_090--Hb_000343_100 Hb_000816_020 Hb_000816_020 Hb_008749_090--Hb_000816_020 Hb_003517_010--Hb_149515_010 Hb_005389_190 Hb_005389_190 Hb_003517_010--Hb_005389_190 Hb_003517_010--Hb_000816_020 Hb_006096_020 Hb_006096_020 Hb_003517_010--Hb_006096_020 Hb_029904_010 Hb_029904_010 Hb_003517_010--Hb_029904_010 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_011909_010 Hb_011909_010 Hb_149515_010--Hb_011909_010 Hb_000649_180 Hb_000649_180 Hb_149515_010--Hb_000649_180 Hb_002291_020 Hb_002291_020 Hb_149515_010--Hb_002291_020 Hb_007919_040 Hb_007919_040 Hb_149515_010--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_149515_010--Hb_000141_010 Hb_172939_010 Hb_172939_010 Hb_006916_190--Hb_172939_010 Hb_000216_030 Hb_000216_030 Hb_006916_190--Hb_000216_030 Hb_006916_190--Hb_000816_020 Hb_012788_010 Hb_012788_010 Hb_006916_190--Hb_012788_010 Hb_168386_010 Hb_168386_010 Hb_006916_190--Hb_168386_010 Hb_000473_030 Hb_000473_030 Hb_001780_130--Hb_000473_030 Hb_000330_150 Hb_000330_150 Hb_001780_130--Hb_000330_150 Hb_011360_060 Hb_011360_060 Hb_001780_130--Hb_011360_060 Hb_011853_010 Hb_011853_010 Hb_001780_130--Hb_011853_010 Hb_046998_010 Hb_046998_010 Hb_001780_130--Hb_046998_010 Hb_000173_260 Hb_000173_260 Hb_001780_130--Hb_000173_260 Hb_003813_120 Hb_003813_120 Hb_000343_100--Hb_003813_120 Hb_000384_050 Hb_000384_050 Hb_000343_100--Hb_000384_050 Hb_004143_120 Hb_004143_120 Hb_000343_100--Hb_004143_120 Hb_000181_020 Hb_000181_020 Hb_000343_100--Hb_000181_020 Hb_000347_110 Hb_000347_110 Hb_000343_100--Hb_000347_110 Hb_000098_310 Hb_000098_310 Hb_000343_100--Hb_000098_310 Hb_082683_010 Hb_082683_010 Hb_000816_020--Hb_082683_010 Hb_000816_020--Hb_006096_020 Hb_001677_230 Hb_001677_230 Hb_000816_020--Hb_001677_230 Hb_002420_010 Hb_002420_010 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_000811_010 Hb_000811_010 Hb_000816_020--Hb_000811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38825 3.86953 1.29957 2.18326 0.767169 0.429466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305197 0.0799519 3.77271 17.4813 4.48343

CAGE analysis