Hb_172939_010

Information

Type -
Description -
Location Contig172939: 173-1340
Sequence    

Annotation

kegg
ID dosa:Os10t0405100-01
description Os10g0405100; Similar to serine/threonine-protein kinase NAK.
nr
ID ABR16118.1
description unknown [Picea sitchensis]
swissprot
ID -
description -
trembl
ID M1C2N2
description Uncharacterized protein (Fragment) OS=Solanum tuberosum GN=PGSC0003DMG400022696 PE=4 SV=1
Gene Ontology
ID GO:0016301
description protein kinase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172939_010 0.0 - - unknown [Picea sitchensis]
2 Hb_000120_880 0.1509737872 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
3 Hb_004310_170 0.1734724809 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
4 Hb_025668_020 0.1740977584 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003640_010 0.1748922591 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
6 Hb_002122_050 0.1796417529 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_168386_010 0.1806168691 - - Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_010068_050 0.1811875479 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
9 Hb_000445_030 0.1817564564 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
10 Hb_001519_240 0.1825343231 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000816_020 0.1888633362 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
12 Hb_007676_060 0.1939408775 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
13 Hb_001677_230 0.1943554068 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
14 Hb_000046_610 0.1977192343 - - PREDICTED: putative cullin-like protein 2 isoform X3 [Populus euphratica]
15 Hb_135554_010 0.1983668512 - - Insulin-degrading enzyme, putative [Ricinus communis]
16 Hb_013848_030 0.199878822 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
17 Hb_006916_190 0.2005024367 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_170878_060 0.2068703734 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
19 Hb_033594_100 0.2075375478 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_031931_030 0.2090286035 - - lipid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_172939_010 Hb_172939_010 Hb_000120_880 Hb_000120_880 Hb_172939_010--Hb_000120_880 Hb_004310_170 Hb_004310_170 Hb_172939_010--Hb_004310_170 Hb_025668_020 Hb_025668_020 Hb_172939_010--Hb_025668_020 Hb_003640_010 Hb_003640_010 Hb_172939_010--Hb_003640_010 Hb_002122_050 Hb_002122_050 Hb_172939_010--Hb_002122_050 Hb_168386_010 Hb_168386_010 Hb_172939_010--Hb_168386_010 Hb_000120_880--Hb_003640_010 Hb_001607_070 Hb_001607_070 Hb_000120_880--Hb_001607_070 Hb_000254_060 Hb_000254_060 Hb_000120_880--Hb_000254_060 Hb_001778_040 Hb_001778_040 Hb_000120_880--Hb_001778_040 Hb_168319_060 Hb_168319_060 Hb_000120_880--Hb_168319_060 Hb_170878_060 Hb_170878_060 Hb_000120_880--Hb_170878_060 Hb_000836_480 Hb_000836_480 Hb_004310_170--Hb_000836_480 Hb_001597_110 Hb_001597_110 Hb_004310_170--Hb_001597_110 Hb_006573_250 Hb_006573_250 Hb_004310_170--Hb_006573_250 Hb_099157_010 Hb_099157_010 Hb_004310_170--Hb_099157_010 Hb_006916_020 Hb_006916_020 Hb_004310_170--Hb_006916_020 Hb_000653_010 Hb_000653_010 Hb_004310_170--Hb_000653_010 Hb_007676_060 Hb_007676_060 Hb_025668_020--Hb_007676_060 Hb_000751_070 Hb_000751_070 Hb_025668_020--Hb_000751_070 Hb_000567_150 Hb_000567_150 Hb_025668_020--Hb_000567_150 Hb_025668_020--Hb_170878_060 Hb_001519_240 Hb_001519_240 Hb_025668_020--Hb_001519_240 Hb_003992_220 Hb_003992_220 Hb_025668_020--Hb_003992_220 Hb_013848_030 Hb_013848_030 Hb_003640_010--Hb_013848_030 Hb_003085_080 Hb_003085_080 Hb_003640_010--Hb_003085_080 Hb_000445_030 Hb_000445_030 Hb_003640_010--Hb_000445_030 Hb_002448_020 Hb_002448_020 Hb_003640_010--Hb_002448_020 Hb_002622_010 Hb_002622_010 Hb_003640_010--Hb_002622_010 Hb_000675_040 Hb_000675_040 Hb_002122_050--Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_002122_050--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_002122_050--Hb_059780_010 Hb_009230_020 Hb_009230_020 Hb_002122_050--Hb_009230_020 Hb_002122_050--Hb_007676_060 Hb_131320_010 Hb_131320_010 Hb_002122_050--Hb_131320_010 Hb_006916_190 Hb_006916_190 Hb_168386_010--Hb_006916_190 Hb_002639_010 Hb_002639_010 Hb_168386_010--Hb_002639_010 Hb_001304_130 Hb_001304_130 Hb_168386_010--Hb_001304_130 Hb_009642_010 Hb_009642_010 Hb_168386_010--Hb_009642_010 Hb_121441_010 Hb_121441_010 Hb_168386_010--Hb_121441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.34685 0.556104 2.66565 0 0.476431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0992499 0.508169 7.69003 4.86305

CAGE analysis