Hb_002639_010

Information

Type -
Description -
Location Contig2639: 6995-8055
Sequence    

Annotation

kegg
ID rcu:RCOM_1599840
description pseudouridylate synthase, putative
nr
ID XP_002510619.1
description pseudouridylate synthase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8H6
description Pseudouridylate synthase, putative OS=Ricinus communis GN=RCOM_1599840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_010 0.0 - - pseudouridylate synthase, putative [Ricinus communis]
2 Hb_001652_070 0.2290247914 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
3 Hb_168386_010 0.2307751434 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_004894_010 0.2348183758 - - -
5 Hb_022819_010 0.2494961606 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_074670_010 0.2726343667 - - hypothetical protein VITISV_015625 [Vitis vinifera]
7 Hb_096811_010 0.2968465296 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
8 Hb_182680_010 0.2974000551 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
9 Hb_004162_020 0.2989802665 - - -
10 Hb_001136_030 0.3006988586 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
11 Hb_000565_010 0.3016446376 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
12 Hb_006916_190 0.3047384515 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_002566_010 0.3076168155 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
14 Hb_000046_610 0.3087195399 - - PREDICTED: putative cullin-like protein 2 isoform X3 [Populus euphratica]
15 Hb_172939_010 0.3098102065 - - unknown [Picea sitchensis]
16 Hb_002122_040 0.310933502 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_034359_010 0.3111800743 - - -
18 Hb_031931_030 0.3115554572 - - lipid binding protein, putative [Ricinus communis]
19 Hb_019893_010 0.312540555 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
20 Hb_029769_010 0.3135935336 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_002639_010 Hb_002639_010 Hb_001652_070 Hb_001652_070 Hb_002639_010--Hb_001652_070 Hb_168386_010 Hb_168386_010 Hb_002639_010--Hb_168386_010 Hb_004894_010 Hb_004894_010 Hb_002639_010--Hb_004894_010 Hb_022819_010 Hb_022819_010 Hb_002639_010--Hb_022819_010 Hb_074670_010 Hb_074670_010 Hb_002639_010--Hb_074670_010 Hb_096811_010 Hb_096811_010 Hb_002639_010--Hb_096811_010 Hb_002255_080 Hb_002255_080 Hb_001652_070--Hb_002255_080 Hb_001341_190 Hb_001341_190 Hb_001652_070--Hb_001341_190 Hb_002456_020 Hb_002456_020 Hb_001652_070--Hb_002456_020 Hb_000117_150 Hb_000117_150 Hb_001652_070--Hb_000117_150 Hb_001652_070--Hb_022819_010 Hb_172939_010 Hb_172939_010 Hb_168386_010--Hb_172939_010 Hb_006916_190 Hb_006916_190 Hb_168386_010--Hb_006916_190 Hb_001304_130 Hb_001304_130 Hb_168386_010--Hb_001304_130 Hb_009642_010 Hb_009642_010 Hb_168386_010--Hb_009642_010 Hb_121441_010 Hb_121441_010 Hb_168386_010--Hb_121441_010 Hb_000243_110 Hb_000243_110 Hb_004894_010--Hb_000243_110 Hb_037960_010 Hb_037960_010 Hb_004894_010--Hb_037960_010 Hb_001410_100 Hb_001410_100 Hb_004894_010--Hb_001410_100 Hb_019893_010 Hb_019893_010 Hb_004894_010--Hb_019893_010 Hb_004894_010--Hb_022819_010 Hb_182680_010 Hb_182680_010 Hb_022819_010--Hb_182680_010 Hb_002762_090 Hb_002762_090 Hb_022819_010--Hb_002762_090 Hb_000544_100 Hb_000544_100 Hb_022819_010--Hb_000544_100 Hb_022819_010--Hb_096811_010 Hb_034359_010 Hb_034359_010 Hb_074670_010--Hb_034359_010 Hb_007718_020 Hb_007718_020 Hb_074670_010--Hb_007718_020 Hb_166631_010 Hb_166631_010 Hb_074670_010--Hb_166631_010 Hb_074670_010--Hb_168386_010 Hb_074670_010--Hb_001341_190 Hb_000093_150 Hb_000093_150 Hb_096811_010--Hb_000093_150 Hb_012553_020 Hb_012553_020 Hb_096811_010--Hb_012553_020 Hb_096811_010--Hb_019893_010 Hb_000077_330 Hb_000077_330 Hb_096811_010--Hb_000077_330 Hb_000343_100 Hb_000343_100 Hb_096811_010--Hb_000343_100 Hb_008749_090 Hb_008749_090 Hb_096811_010--Hb_008749_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0521331 0 0.0853155 0 0.137408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.433128 0.112373

CAGE analysis