Hb_001410_100

Information

Type -
Description -
Location Contig1410: 124417-126122
Sequence    

Annotation

kegg
ID mdm:103450588
description putative ribonuclease H protein At1g65750
nr
ID KCW84083.1
description hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059D025
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00966 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_100 0.0 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
2 Hb_037960_010 0.1147833239 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002595_020 0.2331733153 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
4 Hb_031862_280 0.2347761602 - - hypothetical protein VITISV_012289 [Vitis vinifera]
5 Hb_089610_010 0.2355592631 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
6 Hb_004894_010 0.2426512674 - - -
7 Hb_000243_110 0.2450134303 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
8 Hb_170935_010 0.2452205944 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
9 Hb_010810_090 0.2481934361 - - -
10 Hb_004908_010 0.2525429188 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
11 Hb_043903_010 0.2607837461 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
12 Hb_000375_040 0.2658478675 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
13 Hb_062904_010 0.2678302792 - - hypothetical protein RCOM_0725500 [Ricinus communis]
14 Hb_145535_010 0.2713038909 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_000412_030 0.2717573187 - - glycosyl hydrolase family 35 family protein [Populus trichocarpa]
16 Hb_011382_030 0.2721553928 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
17 Hb_010253_010 0.272847082 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Amborella trichopoda]
18 Hb_003446_030 0.2785969147 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
19 Hb_000541_020 0.2787435845 - - -
20 Hb_003010_040 0.2882451652 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]

Gene co-expression network

sample Hb_001410_100 Hb_001410_100 Hb_037960_010 Hb_037960_010 Hb_001410_100--Hb_037960_010 Hb_002595_020 Hb_002595_020 Hb_001410_100--Hb_002595_020 Hb_031862_280 Hb_031862_280 Hb_001410_100--Hb_031862_280 Hb_089610_010 Hb_089610_010 Hb_001410_100--Hb_089610_010 Hb_004894_010 Hb_004894_010 Hb_001410_100--Hb_004894_010 Hb_000243_110 Hb_000243_110 Hb_001410_100--Hb_000243_110 Hb_011382_030 Hb_011382_030 Hb_037960_010--Hb_011382_030 Hb_043903_010 Hb_043903_010 Hb_037960_010--Hb_043903_010 Hb_000375_040 Hb_000375_040 Hb_037960_010--Hb_000375_040 Hb_003446_030 Hb_003446_030 Hb_037960_010--Hb_003446_030 Hb_145535_010 Hb_145535_010 Hb_037960_010--Hb_145535_010 Hb_002595_020--Hb_031862_280 Hb_002595_020--Hb_089610_010 Hb_004908_010 Hb_004908_010 Hb_002595_020--Hb_004908_010 Hb_170935_010 Hb_170935_010 Hb_002595_020--Hb_170935_010 Hb_000608_070 Hb_000608_070 Hb_002595_020--Hb_000608_070 Hb_031862_280--Hb_004908_010 Hb_031862_280--Hb_089610_010 Hb_031862_280--Hb_170935_010 Hb_031862_280--Hb_000608_070 Hb_004246_010 Hb_004246_010 Hb_031862_280--Hb_004246_010 Hb_089610_010--Hb_004908_010 Hb_089610_010--Hb_170935_010 Hb_017987_010 Hb_017987_010 Hb_089610_010--Hb_017987_010 Hb_011316_130 Hb_011316_130 Hb_089610_010--Hb_011316_130 Hb_004894_010--Hb_000243_110 Hb_004894_010--Hb_037960_010 Hb_002639_010 Hb_002639_010 Hb_004894_010--Hb_002639_010 Hb_019893_010 Hb_019893_010 Hb_004894_010--Hb_019893_010 Hb_022819_010 Hb_022819_010 Hb_004894_010--Hb_022819_010 Hb_000011_480 Hb_000011_480 Hb_000243_110--Hb_000011_480 Hb_000243_110--Hb_037960_010 Hb_000025_020 Hb_000025_020 Hb_000243_110--Hb_000025_020 Hb_000483_110 Hb_000483_110 Hb_000243_110--Hb_000483_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0313242 0 0 0 0.0501578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.220101 0

CAGE analysis