Hb_031862_280

Information

Type -
Description -
Location Contig31862: 225296-225652
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN81705.1
description hypothetical protein VITISV_012289 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C1B6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_280 0.0 - - hypothetical protein VITISV_012289 [Vitis vinifera]
2 Hb_002595_020 0.0145046918 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
3 Hb_004908_010 0.0674175799 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
4 Hb_089610_010 0.0744036871 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
5 Hb_170935_010 0.103805752 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
6 Hb_000608_070 0.167937172 - - -
7 Hb_004246_010 0.2234895936 - - -
8 Hb_001410_100 0.2347761602 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
9 Hb_037960_010 0.2517371972 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_011316_130 0.266629393 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_017987_010 0.2741154673 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
12 Hb_165085_010 0.2751759425 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
13 Hb_142295_010 0.2786959282 - - -
14 Hb_000375_040 0.2836299999 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
15 Hb_092416_010 0.284574071 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
16 Hb_002686_370 0.2850507667 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
17 Hb_000463_110 0.2852742964 - - -
18 Hb_008953_010 0.2902059311 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
19 Hb_002260_230 0.2930894001 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
20 Hb_001998_040 0.2935880996 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_031862_280 Hb_031862_280 Hb_002595_020 Hb_002595_020 Hb_031862_280--Hb_002595_020 Hb_004908_010 Hb_004908_010 Hb_031862_280--Hb_004908_010 Hb_089610_010 Hb_089610_010 Hb_031862_280--Hb_089610_010 Hb_170935_010 Hb_170935_010 Hb_031862_280--Hb_170935_010 Hb_000608_070 Hb_000608_070 Hb_031862_280--Hb_000608_070 Hb_004246_010 Hb_004246_010 Hb_031862_280--Hb_004246_010 Hb_002595_020--Hb_089610_010 Hb_002595_020--Hb_004908_010 Hb_002595_020--Hb_170935_010 Hb_002595_020--Hb_000608_070 Hb_001410_100 Hb_001410_100 Hb_002595_020--Hb_001410_100 Hb_004908_010--Hb_170935_010 Hb_004908_010--Hb_000608_070 Hb_004908_010--Hb_089610_010 Hb_004908_010--Hb_004246_010 Hb_089610_010--Hb_170935_010 Hb_017987_010 Hb_017987_010 Hb_089610_010--Hb_017987_010 Hb_011316_130 Hb_011316_130 Hb_089610_010--Hb_011316_130 Hb_170935_010--Hb_000608_070 Hb_170935_010--Hb_004246_010 Hb_000608_070--Hb_004246_010 Hb_165085_010 Hb_165085_010 Hb_000608_070--Hb_165085_010 Hb_142295_010 Hb_142295_010 Hb_000608_070--Hb_142295_010 Hb_092416_010 Hb_092416_010 Hb_000608_070--Hb_092416_010 Hb_002686_370 Hb_002686_370 Hb_000608_070--Hb_002686_370 Hb_004246_010--Hb_165085_010 Hb_004246_010--Hb_142295_010 Hb_004246_010--Hb_092416_010 Hb_004246_010--Hb_002686_370 Hb_000463_110 Hb_000463_110 Hb_004246_010--Hb_000463_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0969447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.347069 0

CAGE analysis