Hb_000608_070

Information

Type -
Description -
Location Contig608: 27131-28693
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_070 0.0 - - -
2 Hb_004246_010 0.0564156703 - - -
3 Hb_004908_010 0.1010681964 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
4 Hb_165085_010 0.1092113028 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
5 Hb_142295_010 0.1128170149 - - -
6 Hb_092416_010 0.1188411569 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
7 Hb_002686_370 0.1193298481 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
8 Hb_000463_110 0.1195590107 - - -
9 Hb_002260_230 0.1275742704 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
10 Hb_001998_040 0.1280859543 - - ATP binding protein, putative [Ricinus communis]
11 Hb_002641_150 0.1291547871 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
12 Hb_001792_010 0.1299134303 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
13 Hb_170935_010 0.1521078933 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
14 Hb_000589_430 0.1529178094 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
15 Hb_000483_170 0.1652227614 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
16 Hb_031862_280 0.167937172 - - hypothetical protein VITISV_012289 [Vitis vinifera]
17 Hb_002595_020 0.1822058896 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
18 Hb_001274_010 0.1892629695 - - -
19 Hb_157349_010 0.1980603802 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
20 Hb_007586_020 0.2218945908 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_000608_070 Hb_000608_070 Hb_004246_010 Hb_004246_010 Hb_000608_070--Hb_004246_010 Hb_004908_010 Hb_004908_010 Hb_000608_070--Hb_004908_010 Hb_165085_010 Hb_165085_010 Hb_000608_070--Hb_165085_010 Hb_142295_010 Hb_142295_010 Hb_000608_070--Hb_142295_010 Hb_092416_010 Hb_092416_010 Hb_000608_070--Hb_092416_010 Hb_002686_370 Hb_002686_370 Hb_000608_070--Hb_002686_370 Hb_004246_010--Hb_165085_010 Hb_004246_010--Hb_142295_010 Hb_004246_010--Hb_092416_010 Hb_004246_010--Hb_002686_370 Hb_000463_110 Hb_000463_110 Hb_004246_010--Hb_000463_110 Hb_031862_280 Hb_031862_280 Hb_004908_010--Hb_031862_280 Hb_002595_020 Hb_002595_020 Hb_004908_010--Hb_002595_020 Hb_170935_010 Hb_170935_010 Hb_004908_010--Hb_170935_010 Hb_089610_010 Hb_089610_010 Hb_004908_010--Hb_089610_010 Hb_004908_010--Hb_004246_010 Hb_165085_010--Hb_142295_010 Hb_165085_010--Hb_092416_010 Hb_165085_010--Hb_002686_370 Hb_165085_010--Hb_000463_110 Hb_002260_230 Hb_002260_230 Hb_165085_010--Hb_002260_230 Hb_001998_040 Hb_001998_040 Hb_165085_010--Hb_001998_040 Hb_142295_010--Hb_092416_010 Hb_142295_010--Hb_002686_370 Hb_142295_010--Hb_000463_110 Hb_142295_010--Hb_002260_230 Hb_142295_010--Hb_001998_040 Hb_092416_010--Hb_002686_370 Hb_092416_010--Hb_000463_110 Hb_092416_010--Hb_002260_230 Hb_092416_010--Hb_001998_040 Hb_002686_370--Hb_000463_110 Hb_002686_370--Hb_002260_230 Hb_002686_370--Hb_001998_040 Hb_002641_150 Hb_002641_150 Hb_002686_370--Hb_002641_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.193874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.290699 0

CAGE analysis