Hb_002641_150

Information

Type -
Description -
Location Contig2641: 194052-198024
Sequence    

Annotation

kegg
ID cit:102612410
description stachyose synthase-like
nr
ID XP_006488987.1
description PREDICTED: stachyose synthase-like [Citrus sinensis]
swissprot
ID Q93XK2
description Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1
trembl
ID V4S1K1
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10006437mg PE=4 SV=1
Gene Ontology
ID GO:0003824
description stachyose synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_150 0.0 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
2 Hb_001792_010 0.0007630821 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
3 Hb_001998_040 0.0010749981 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002260_230 0.001589597 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
5 Hb_000463_110 0.0096474249 - - -
6 Hb_002686_370 0.0098777192 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
7 Hb_092416_010 0.010368808 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
8 Hb_142295_010 0.0164207383 - - -
9 Hb_165085_010 0.020041521 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
10 Hb_000589_430 0.0239270078 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
11 Hb_000483_170 0.0363373374 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
12 Hb_001274_010 0.0606246032 - - -
13 Hb_157349_010 0.0695263172 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
14 Hb_004246_010 0.0729244426 - - -
15 Hb_007586_020 0.0936816455 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_004888_050 0.0952871713 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_000608_070 0.1291547871 - - -
18 Hb_000085_110 0.1320087667 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
19 Hb_000245_240 0.132939794 - - -
20 Hb_088224_010 0.1341750411 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]

Gene co-expression network

sample Hb_002641_150 Hb_002641_150 Hb_001792_010 Hb_001792_010 Hb_002641_150--Hb_001792_010 Hb_001998_040 Hb_001998_040 Hb_002641_150--Hb_001998_040 Hb_002260_230 Hb_002260_230 Hb_002641_150--Hb_002260_230 Hb_000463_110 Hb_000463_110 Hb_002641_150--Hb_000463_110 Hb_002686_370 Hb_002686_370 Hb_002641_150--Hb_002686_370 Hb_092416_010 Hb_092416_010 Hb_002641_150--Hb_092416_010 Hb_001792_010--Hb_001998_040 Hb_001792_010--Hb_002260_230 Hb_001792_010--Hb_000463_110 Hb_001792_010--Hb_002686_370 Hb_001792_010--Hb_092416_010 Hb_001998_040--Hb_002260_230 Hb_001998_040--Hb_000463_110 Hb_001998_040--Hb_002686_370 Hb_001998_040--Hb_092416_010 Hb_002260_230--Hb_000463_110 Hb_002260_230--Hb_002686_370 Hb_002260_230--Hb_092416_010 Hb_000463_110--Hb_002686_370 Hb_000463_110--Hb_092416_010 Hb_142295_010 Hb_142295_010 Hb_000463_110--Hb_142295_010 Hb_002686_370--Hb_092416_010 Hb_002686_370--Hb_142295_010 Hb_092416_010--Hb_142295_010 Hb_165085_010 Hb_165085_010 Hb_092416_010--Hb_165085_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00832588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00676578 0

CAGE analysis