Hb_002595_020

Information

Type -
Description -
Location Contig2595: 6671-6910
Sequence    

Annotation

kegg
ID mus:103996584
description 16.9 kDa class I heat shock protein 2-like
nr
ID XP_009794744.1
description PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
swissprot
ID P02520
description Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1
trembl
ID R7WCX6
description Uncharacterized protein OS=Aegilops tauschii GN=F775_43097 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002595_020 0.0 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
2 Hb_031862_280 0.0145046918 - - hypothetical protein VITISV_012289 [Vitis vinifera]
3 Hb_089610_010 0.0599493274 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
4 Hb_004908_010 0.0818730373 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
5 Hb_170935_010 0.1110774271 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
6 Hb_000608_070 0.1822058896 - - -
7 Hb_001410_100 0.2331733153 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
8 Hb_004246_010 0.2376132849 - - -
9 Hb_037960_010 0.2459923524 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_011316_130 0.256705908 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_017987_010 0.2617691121 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
12 Hb_000375_040 0.271415149 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
13 Hb_008953_010 0.2777195798 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
14 Hb_165085_010 0.2891438992 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
15 Hb_043903_010 0.2891488275 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
16 Hb_142295_010 0.2926526169 - - -
17 Hb_092416_010 0.2985117621 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
18 Hb_002686_370 0.2989869073 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
19 Hb_000463_110 0.2992097094 - - -
20 Hb_010253_010 0.3022759256 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Amborella trichopoda]

Gene co-expression network

sample Hb_002595_020 Hb_002595_020 Hb_031862_280 Hb_031862_280 Hb_002595_020--Hb_031862_280 Hb_089610_010 Hb_089610_010 Hb_002595_020--Hb_089610_010 Hb_004908_010 Hb_004908_010 Hb_002595_020--Hb_004908_010 Hb_170935_010 Hb_170935_010 Hb_002595_020--Hb_170935_010 Hb_000608_070 Hb_000608_070 Hb_002595_020--Hb_000608_070 Hb_001410_100 Hb_001410_100 Hb_002595_020--Hb_001410_100 Hb_031862_280--Hb_004908_010 Hb_031862_280--Hb_089610_010 Hb_031862_280--Hb_170935_010 Hb_031862_280--Hb_000608_070 Hb_004246_010 Hb_004246_010 Hb_031862_280--Hb_004246_010 Hb_089610_010--Hb_004908_010 Hb_089610_010--Hb_170935_010 Hb_017987_010 Hb_017987_010 Hb_089610_010--Hb_017987_010 Hb_011316_130 Hb_011316_130 Hb_089610_010--Hb_011316_130 Hb_004908_010--Hb_170935_010 Hb_004908_010--Hb_000608_070 Hb_004908_010--Hb_004246_010 Hb_170935_010--Hb_000608_070 Hb_170935_010--Hb_004246_010 Hb_000608_070--Hb_004246_010 Hb_165085_010 Hb_165085_010 Hb_000608_070--Hb_165085_010 Hb_142295_010 Hb_142295_010 Hb_000608_070--Hb_142295_010 Hb_092416_010 Hb_092416_010 Hb_000608_070--Hb_092416_010 Hb_002686_370 Hb_002686_370 Hb_000608_070--Hb_002686_370 Hb_037960_010 Hb_037960_010 Hb_001410_100--Hb_037960_010 Hb_001410_100--Hb_031862_280 Hb_001410_100--Hb_089610_010 Hb_004894_010 Hb_004894_010 Hb_001410_100--Hb_004894_010 Hb_000243_110 Hb_000243_110 Hb_001410_100--Hb_000243_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.343825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.33835 0

CAGE analysis