Hb_004894_010

Information

Type -
Description -
Location Contig4894: 6569-7148
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45176: 6724-8097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004894_010 0.0 - - -
2 Hb_000243_110 0.2134439068 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
3 Hb_037960_010 0.2177749804 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002639_010 0.2348183758 - - pseudouridylate synthase, putative [Ricinus communis]
5 Hb_001410_100 0.2426512674 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
6 Hb_019893_010 0.2469851104 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
7 Hb_022819_010 0.2674068781 - - Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_096811_010 0.2703816575 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
9 Hb_182680_010 0.2719709602 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
10 Hb_000363_470 0.2795172317 - - hypothetical protein JCGZ_00950 [Jatropha curcas]
11 Hb_005085_010 0.2824543625 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
12 Hb_170935_010 0.2840509994 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
13 Hb_002325_020 0.2843784533 - - zinc finger protein, putative [Ricinus communis]
14 Hb_011382_030 0.2910992877 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
15 Hb_000544_100 0.2967618569 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
16 Hb_001769_090 0.2980665573 - - PREDICTED: uncharacterized protein LOC105630842 [Jatropha curcas]
17 Hb_000565_010 0.2984624944 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
18 Hb_000116_550 0.3043767546 - - conserved hypothetical protein [Ricinus communis]
19 Hb_089610_010 0.3060008457 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
20 Hb_002595_020 0.3062180239 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004894_010 Hb_004894_010 Hb_000243_110 Hb_000243_110 Hb_004894_010--Hb_000243_110 Hb_037960_010 Hb_037960_010 Hb_004894_010--Hb_037960_010 Hb_002639_010 Hb_002639_010 Hb_004894_010--Hb_002639_010 Hb_001410_100 Hb_001410_100 Hb_004894_010--Hb_001410_100 Hb_019893_010 Hb_019893_010 Hb_004894_010--Hb_019893_010 Hb_022819_010 Hb_022819_010 Hb_004894_010--Hb_022819_010 Hb_000011_480 Hb_000011_480 Hb_000243_110--Hb_000011_480 Hb_000243_110--Hb_037960_010 Hb_000025_020 Hb_000025_020 Hb_000243_110--Hb_000025_020 Hb_000243_110--Hb_001410_100 Hb_000483_110 Hb_000483_110 Hb_000243_110--Hb_000483_110 Hb_037960_010--Hb_001410_100 Hb_011382_030 Hb_011382_030 Hb_037960_010--Hb_011382_030 Hb_043903_010 Hb_043903_010 Hb_037960_010--Hb_043903_010 Hb_000375_040 Hb_000375_040 Hb_037960_010--Hb_000375_040 Hb_003446_030 Hb_003446_030 Hb_037960_010--Hb_003446_030 Hb_145535_010 Hb_145535_010 Hb_037960_010--Hb_145535_010 Hb_001652_070 Hb_001652_070 Hb_002639_010--Hb_001652_070 Hb_168386_010 Hb_168386_010 Hb_002639_010--Hb_168386_010 Hb_002639_010--Hb_022819_010 Hb_074670_010 Hb_074670_010 Hb_002639_010--Hb_074670_010 Hb_096811_010 Hb_096811_010 Hb_002639_010--Hb_096811_010 Hb_002595_020 Hb_002595_020 Hb_001410_100--Hb_002595_020 Hb_031862_280 Hb_031862_280 Hb_001410_100--Hb_031862_280 Hb_089610_010 Hb_089610_010 Hb_001410_100--Hb_089610_010 Hb_000205_210 Hb_000205_210 Hb_019893_010--Hb_000205_210 Hb_032050_050 Hb_032050_050 Hb_019893_010--Hb_032050_050 Hb_000140_260 Hb_000140_260 Hb_019893_010--Hb_000140_260 Hb_000497_120 Hb_000497_120 Hb_019893_010--Hb_000497_120 Hb_000939_030 Hb_000939_030 Hb_019893_010--Hb_000939_030 Hb_031340_030 Hb_031340_030 Hb_019893_010--Hb_031340_030 Hb_182680_010 Hb_182680_010 Hb_022819_010--Hb_182680_010 Hb_002762_090 Hb_002762_090 Hb_022819_010--Hb_002762_090 Hb_000544_100 Hb_000544_100 Hb_022819_010--Hb_000544_100 Hb_022819_010--Hb_096811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.736244 0 0.552025 0.327152 1.64569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.72947 0.357048

CAGE analysis