Hb_001652_070

Information

Type -
Description -
Location Contig1652: 61228-61879
Sequence    

Annotation

kegg
ID mdm:103439285
description uncharacterized LOC103439285
nr
ID XP_008376046.1
description PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15221: 53397-64547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_070 0.0 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
2 Hb_002639_010 0.2290247914 - - pseudouridylate synthase, putative [Ricinus communis]
3 Hb_002255_080 0.2303589715 - - -
4 Hb_001341_190 0.2558106242 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
5 Hb_002456_020 0.2574659739 - - Ankyrin repeat family protein [Theobroma cacao]
6 Hb_000117_150 0.2684580197 - - hypothetical protein RCOM_0079810 [Ricinus communis]
7 Hb_022819_010 0.2869588804 - - Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_000138_080 0.2992826184 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007975_020 0.3015103968 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_002311_270 0.3056029432 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
11 Hb_168386_010 0.3065644927 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_104835_010 0.3129212082 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
13 Hb_156499_010 0.320404753 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
14 Hb_001832_100 0.3204573462 - - -
15 Hb_000203_220 0.3220131026 - - PREDICTED: uncharacterized protein LOC105168575 [Sesamum indicum]
16 Hb_007718_020 0.3227587555 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
17 Hb_002042_040 0.3262437507 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
18 Hb_004162_020 0.3306846753 - - -
19 Hb_008226_110 0.3316593541 - - uncharacterized protein LOC100501343 [Zea mays]
20 Hb_034359_010 0.333339257 - - -

Gene co-expression network

sample Hb_001652_070 Hb_001652_070 Hb_002639_010 Hb_002639_010 Hb_001652_070--Hb_002639_010 Hb_002255_080 Hb_002255_080 Hb_001652_070--Hb_002255_080 Hb_001341_190 Hb_001341_190 Hb_001652_070--Hb_001341_190 Hb_002456_020 Hb_002456_020 Hb_001652_070--Hb_002456_020 Hb_000117_150 Hb_000117_150 Hb_001652_070--Hb_000117_150 Hb_022819_010 Hb_022819_010 Hb_001652_070--Hb_022819_010 Hb_168386_010 Hb_168386_010 Hb_002639_010--Hb_168386_010 Hb_004894_010 Hb_004894_010 Hb_002639_010--Hb_004894_010 Hb_002639_010--Hb_022819_010 Hb_074670_010 Hb_074670_010 Hb_002639_010--Hb_074670_010 Hb_096811_010 Hb_096811_010 Hb_002639_010--Hb_096811_010 Hb_007975_020 Hb_007975_020 Hb_002255_080--Hb_007975_020 Hb_002255_080--Hb_000117_150 Hb_002255_080--Hb_001341_190 Hb_001737_040 Hb_001737_040 Hb_002255_080--Hb_001737_040 Hb_002311_260 Hb_002311_260 Hb_002255_080--Hb_002311_260 Hb_000875_090 Hb_000875_090 Hb_001341_190--Hb_000875_090 Hb_001341_190--Hb_007975_020 Hb_007718_020 Hb_007718_020 Hb_001341_190--Hb_007718_020 Hb_000659_090 Hb_000659_090 Hb_001341_190--Hb_000659_090 Hb_002311_270 Hb_002311_270 Hb_002456_020--Hb_002311_270 Hb_012650_010 Hb_012650_010 Hb_002456_020--Hb_012650_010 Hb_016834_010 Hb_016834_010 Hb_002456_020--Hb_016834_010 Hb_002456_020--Hb_000117_150 Hb_001832_100 Hb_001832_100 Hb_002456_020--Hb_001832_100 Hb_016835_020 Hb_016835_020 Hb_000117_150--Hb_016835_020 Hb_025668_020 Hb_025668_020 Hb_000117_150--Hb_025668_020 Hb_000009_430 Hb_000009_430 Hb_000117_150--Hb_000009_430 Hb_001597_090 Hb_001597_090 Hb_000117_150--Hb_001597_090 Hb_104835_010 Hb_104835_010 Hb_000117_150--Hb_104835_010 Hb_182680_010 Hb_182680_010 Hb_022819_010--Hb_182680_010 Hb_002762_090 Hb_002762_090 Hb_022819_010--Hb_002762_090 Hb_000544_100 Hb_000544_100 Hb_022819_010--Hb_000544_100 Hb_022819_010--Hb_004894_010 Hb_022819_010--Hb_096811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.268513 0 0.206863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.55649 0.258729

CAGE analysis