Hb_002311_270

Information

Type -
Description -
Location Contig2311: 135118-137126
Sequence    

Annotation

kegg
ID mdm:103414591
description WD repeat-containing protein 43-like
nr
ID XP_008351178.1
description PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
swissprot
ID -
description -
trembl
ID W9SP16
description WD repeat-containing protein 43 OS=Morus notabilis GN=L484_001694 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24318: 137693-141736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_270 0.0 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
2 Hb_002456_020 0.1984244619 - - Ankyrin repeat family protein [Theobroma cacao]
3 Hb_012633_030 0.2078405543 - - hypothetical protein RCOM_0452240 [Ricinus communis]
4 Hb_000117_150 0.216915488 - - hypothetical protein RCOM_0079810 [Ricinus communis]
5 Hb_005288_060 0.2252071687 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
6 Hb_001971_050 0.2313214339 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_002874_030 0.2350106129 - - hypothetical protein JCGZ_07001 [Jatropha curcas]
8 Hb_025668_020 0.2364688973 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002217_390 0.2390720912 - - PREDICTED: galactokinase [Jatropha curcas]
10 Hb_002311_260 0.2464248037 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
11 Hb_060658_010 0.248656082 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_062013_010 0.2490648862 - - phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_001916_030 0.2512985628 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
14 Hb_000414_180 0.2519721938 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
15 Hb_010068_050 0.2555118523 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
16 Hb_001737_040 0.2568751334 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
17 Hb_000668_110 0.2584356218 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
18 Hb_033594_100 0.2589364591 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000875_070 0.2590216616 - - -
20 Hb_000574_250 0.2613795952 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_270 Hb_002311_270 Hb_002456_020 Hb_002456_020 Hb_002311_270--Hb_002456_020 Hb_012633_030 Hb_012633_030 Hb_002311_270--Hb_012633_030 Hb_000117_150 Hb_000117_150 Hb_002311_270--Hb_000117_150 Hb_005288_060 Hb_005288_060 Hb_002311_270--Hb_005288_060 Hb_001971_050 Hb_001971_050 Hb_002311_270--Hb_001971_050 Hb_002874_030 Hb_002874_030 Hb_002311_270--Hb_002874_030 Hb_012650_010 Hb_012650_010 Hb_002456_020--Hb_012650_010 Hb_001652_070 Hb_001652_070 Hb_002456_020--Hb_001652_070 Hb_016834_010 Hb_016834_010 Hb_002456_020--Hb_016834_010 Hb_002456_020--Hb_000117_150 Hb_001832_100 Hb_001832_100 Hb_002456_020--Hb_001832_100 Hb_004607_040 Hb_004607_040 Hb_012633_030--Hb_004607_040 Hb_000058_090 Hb_000058_090 Hb_012633_030--Hb_000058_090 Hb_078081_010 Hb_078081_010 Hb_012633_030--Hb_078081_010 Hb_000189_590 Hb_000189_590 Hb_012633_030--Hb_000189_590 Hb_004346_010 Hb_004346_010 Hb_012633_030--Hb_004346_010 Hb_016835_020 Hb_016835_020 Hb_000117_150--Hb_016835_020 Hb_025668_020 Hb_025668_020 Hb_000117_150--Hb_025668_020 Hb_000009_430 Hb_000009_430 Hb_000117_150--Hb_000009_430 Hb_002255_080 Hb_002255_080 Hb_000117_150--Hb_002255_080 Hb_001597_090 Hb_001597_090 Hb_000117_150--Hb_001597_090 Hb_104835_010 Hb_104835_010 Hb_000117_150--Hb_104835_010 Hb_006594_080 Hb_006594_080 Hb_005288_060--Hb_006594_080 Hb_000313_230 Hb_000313_230 Hb_005288_060--Hb_000313_230 Hb_000414_180 Hb_000414_180 Hb_005288_060--Hb_000414_180 Hb_000574_250 Hb_000574_250 Hb_005288_060--Hb_000574_250 Hb_010068_050 Hb_010068_050 Hb_005288_060--Hb_010068_050 Hb_005288_060--Hb_002874_030 Hb_001737_040 Hb_001737_040 Hb_001971_050--Hb_001737_040 Hb_029510_090 Hb_029510_090 Hb_001971_050--Hb_029510_090 Hb_001778_040 Hb_001778_040 Hb_001971_050--Hb_001778_040 Hb_013848_030 Hb_013848_030 Hb_001971_050--Hb_013848_030 Hb_000254_060 Hb_000254_060 Hb_001971_050--Hb_000254_060 Hb_004785_090 Hb_004785_090 Hb_001971_050--Hb_004785_090 Hb_001005_040 Hb_001005_040 Hb_002874_030--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_002874_030--Hb_001109_170 Hb_001288_050 Hb_001288_050 Hb_002874_030--Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_002874_030--Hb_000567_150 Hb_002016_130 Hb_002016_130 Hb_002874_030--Hb_002016_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168034 0.0826298 0.172358 0.647602 0 0.277506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102501 0 0 1.35527 1.24511

CAGE analysis