Hb_012633_030

Information

Type -
Description -
Location Contig12633: 31566-32308
Sequence    

Annotation

kegg
ID rcu:RCOM_0452240
description hypothetical protein
nr
ID XP_002531564.1
description hypothetical protein RCOM_0452240 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZZ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07969: 33231-33711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012633_030 0.0 - - hypothetical protein RCOM_0452240 [Ricinus communis]
2 Hb_004607_040 0.1708149536 - - ADP,ATP carrier protein, putative [Ricinus communis]
3 Hb_000058_090 0.2021506338 - - -
4 Hb_002311_270 0.2078405543 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
5 Hb_078081_010 0.2093458468 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
6 Hb_000189_590 0.2126461242 - - PREDICTED: cysteine synthase [Jatropha curcas]
7 Hb_004346_010 0.2222453843 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000203_220 0.2289937539 - - PREDICTED: uncharacterized protein LOC105168575 [Sesamum indicum]
9 Hb_005181_060 0.2390001709 - - ATP-citrate synthase, putative [Ricinus communis]
10 Hb_004785_090 0.2426550326 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
11 Hb_002026_070 0.2439308532 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
12 Hb_003470_060 0.2450172348 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 45 [Jatropha curcas]
13 Hb_000116_120 0.24517619 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
14 Hb_001916_030 0.2456687763 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
15 Hb_004958_020 0.2491951834 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
16 Hb_000186_290 0.251478678 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
17 Hb_003398_090 0.2553495908 - - PREDICTED: expansin-A4 [Jatropha curcas]
18 Hb_000181_020 0.2560610013 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
19 Hb_011360_060 0.2579341099 - - glycogen phosphorylase, putative [Ricinus communis]
20 Hb_000046_610 0.2587279178 - - PREDICTED: putative cullin-like protein 2 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_012633_030 Hb_012633_030 Hb_004607_040 Hb_004607_040 Hb_012633_030--Hb_004607_040 Hb_000058_090 Hb_000058_090 Hb_012633_030--Hb_000058_090 Hb_002311_270 Hb_002311_270 Hb_012633_030--Hb_002311_270 Hb_078081_010 Hb_078081_010 Hb_012633_030--Hb_078081_010 Hb_000189_590 Hb_000189_590 Hb_012633_030--Hb_000189_590 Hb_004346_010 Hb_004346_010 Hb_012633_030--Hb_004346_010 Hb_000203_220 Hb_000203_220 Hb_004607_040--Hb_000203_220 Hb_001558_030 Hb_001558_030 Hb_004607_040--Hb_001558_030 Hb_004607_040--Hb_078081_010 Hb_000046_610 Hb_000046_610 Hb_004607_040--Hb_000046_610 Hb_004607_040--Hb_004346_010 Hb_086336_010 Hb_086336_010 Hb_000058_090--Hb_086336_010 Hb_003092_050 Hb_003092_050 Hb_000058_090--Hb_003092_050 Hb_001486_060 Hb_001486_060 Hb_000058_090--Hb_001486_060 Hb_000139_510 Hb_000139_510 Hb_000058_090--Hb_000139_510 Hb_000019_010 Hb_000019_010 Hb_000058_090--Hb_000019_010 Hb_002456_020 Hb_002456_020 Hb_002311_270--Hb_002456_020 Hb_000117_150 Hb_000117_150 Hb_002311_270--Hb_000117_150 Hb_005288_060 Hb_005288_060 Hb_002311_270--Hb_005288_060 Hb_001971_050 Hb_001971_050 Hb_002311_270--Hb_001971_050 Hb_002874_030 Hb_002874_030 Hb_002311_270--Hb_002874_030 Hb_000186_290 Hb_000186_290 Hb_078081_010--Hb_000186_290 Hb_002739_040 Hb_002739_040 Hb_078081_010--Hb_002739_040 Hb_001040_200 Hb_001040_200 Hb_078081_010--Hb_001040_200 Hb_000834_040 Hb_000834_040 Hb_078081_010--Hb_000834_040 Hb_002307_010 Hb_002307_010 Hb_078081_010--Hb_002307_010 Hb_001663_120 Hb_001663_120 Hb_078081_010--Hb_001663_120 Hb_011947_020 Hb_011947_020 Hb_000189_590--Hb_011947_020 Hb_002539_020 Hb_002539_020 Hb_000189_590--Hb_002539_020 Hb_002539_010 Hb_002539_010 Hb_000189_590--Hb_002539_010 Hb_030982_060 Hb_030982_060 Hb_000189_590--Hb_030982_060 Hb_001439_110 Hb_001439_110 Hb_000189_590--Hb_001439_110 Hb_002835_350 Hb_002835_350 Hb_000189_590--Hb_002835_350 Hb_004346_010--Hb_000186_290 Hb_001916_030 Hb_001916_030 Hb_004346_010--Hb_001916_030 Hb_004545_070 Hb_004545_070 Hb_004346_010--Hb_004545_070 Hb_007885_020 Hb_007885_020 Hb_004346_010--Hb_007885_020 Hb_009545_030 Hb_009545_030 Hb_004346_010--Hb_009545_030 Hb_004346_010--Hb_078081_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101608 0.290969 0.337357 2.20031 0.192021 0.381618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.725901 0 0 3.58441 1.93375

CAGE analysis