Hb_001558_030

Information

Type -
Description -
Location Contig1558: 11101-18922
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14380g
description POPTRDRAFT_219726; hypothetical protein
nr
ID AIE47273.1
description phosphofructokinase [Hevea brasiliensis]
swissprot
ID Q8VYN6
description ATP-dependent 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1
trembl
ID A0A068LJZ1
description ATP-dependent 6-phosphofructokinase OS=Hevea brasiliensis GN=PFK4 PE=2 SV=1
Gene Ontology
ID GO:0003872
description atp-dependent 6-phosphofructokinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001558_030 0.0 - - phosphofructokinase [Hevea brasiliensis]
2 Hb_000046_610 0.1969874929 - - PREDICTED: putative cullin-like protein 2 isoform X3 [Populus euphratica]
3 Hb_004607_040 0.2056788571 - - ADP,ATP carrier protein, putative [Ricinus communis]
4 Hb_002539_010 0.2057934595 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
5 Hb_009467_040 0.2139465972 - - PREDICTED: putative B3 domain-containing protein At3g24850 [Jatropha curcas]
6 Hb_000116_590 0.2153300345 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
7 Hb_000116_120 0.2210469742 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
8 Hb_001414_020 0.2220720851 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
9 Hb_007423_020 0.223958101 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
10 Hb_001474_010 0.2294120654 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
11 Hb_002539_020 0.2295539476 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
12 Hb_006141_030 0.2305193228 - - -
13 Hb_004041_100 0.2333950605 - - -
14 Hb_000181_020 0.234829863 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
15 Hb_000189_590 0.2352191681 - - PREDICTED: cysteine synthase [Jatropha curcas]
16 Hb_021409_140 0.2361587397 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
17 Hb_172426_050 0.2385025937 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
18 Hb_001500_070 0.2393232297 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000421_270 0.2404909961 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
20 Hb_002835_350 0.2417647335 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]

Gene co-expression network

sample Hb_001558_030 Hb_001558_030 Hb_000046_610 Hb_000046_610 Hb_001558_030--Hb_000046_610 Hb_004607_040 Hb_004607_040 Hb_001558_030--Hb_004607_040 Hb_002539_010 Hb_002539_010 Hb_001558_030--Hb_002539_010 Hb_009467_040 Hb_009467_040 Hb_001558_030--Hb_009467_040 Hb_000116_590 Hb_000116_590 Hb_001558_030--Hb_000116_590 Hb_000116_120 Hb_000116_120 Hb_001558_030--Hb_000116_120 Hb_056101_010 Hb_056101_010 Hb_000046_610--Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_000046_610--Hb_025526_010 Hb_010761_030 Hb_010761_030 Hb_000046_610--Hb_010761_030 Hb_000661_230 Hb_000661_230 Hb_000046_610--Hb_000661_230 Hb_000230_230 Hb_000230_230 Hb_000046_610--Hb_000230_230 Hb_000317_220 Hb_000317_220 Hb_000046_610--Hb_000317_220 Hb_012633_030 Hb_012633_030 Hb_004607_040--Hb_012633_030 Hb_000203_220 Hb_000203_220 Hb_004607_040--Hb_000203_220 Hb_078081_010 Hb_078081_010 Hb_004607_040--Hb_078081_010 Hb_004607_040--Hb_000046_610 Hb_004346_010 Hb_004346_010 Hb_004607_040--Hb_004346_010 Hb_011633_040 Hb_011633_040 Hb_002539_010--Hb_011633_040 Hb_002539_020 Hb_002539_020 Hb_002539_010--Hb_002539_020 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_000625_030 Hb_000625_030 Hb_002539_010--Hb_000625_030 Hb_001500_070 Hb_001500_070 Hb_002539_010--Hb_001500_070 Hb_008226_070 Hb_008226_070 Hb_002539_010--Hb_008226_070 Hb_000135_070 Hb_000135_070 Hb_009467_040--Hb_000135_070 Hb_000181_020 Hb_000181_020 Hb_009467_040--Hb_000181_020 Hb_182680_010 Hb_182680_010 Hb_009467_040--Hb_182680_010 Hb_009467_040--Hb_001500_070 Hb_004129_050 Hb_004129_050 Hb_009467_040--Hb_004129_050 Hb_000421_270 Hb_000421_270 Hb_000116_590--Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_000116_590--Hb_002025_350 Hb_002835_350 Hb_002835_350 Hb_000116_590--Hb_002835_350 Hb_001405_150 Hb_001405_150 Hb_000116_590--Hb_001405_150 Hb_032631_050 Hb_032631_050 Hb_000116_590--Hb_032631_050 Hb_003592_030 Hb_003592_030 Hb_000116_590--Hb_003592_030 Hb_003086_010 Hb_003086_010 Hb_000116_120--Hb_003086_010 Hb_000186_290 Hb_000186_290 Hb_000116_120--Hb_000186_290 Hb_000116_120--Hb_078081_010 Hb_021409_140 Hb_021409_140 Hb_000116_120--Hb_021409_140 Hb_000653_010 Hb_000653_010 Hb_000116_120--Hb_000653_010 Hb_001474_010 Hb_001474_010 Hb_000116_120--Hb_001474_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0543134 0.089175 0.166238 0 0.0616641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0659136 0.069151 0 0.522596 0.109683

CAGE analysis