Hb_004346_010

Information

Type -
Description -
Location Contig4346: 25644-26353
Sequence    

Annotation

kegg
ID rcu:RCOM_0422530
description hypothetical protein
nr
ID XP_002524097.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDM8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0422530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42423: 25854-26092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004346_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000186_290 0.1516643348 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
3 Hb_001916_030 0.1564713498 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
4 Hb_004545_070 0.1756113852 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
5 Hb_007885_020 0.1868005298 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
6 Hb_009545_030 0.1941974474 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
7 Hb_078081_010 0.1959113861 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
8 Hb_007134_030 0.1971798756 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
9 Hb_008143_040 0.2083279662 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
10 Hb_009767_050 0.2104402957 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
11 Hb_005181_060 0.2171952315 - - ATP-citrate synthase, putative [Ricinus communis]
12 Hb_000811_080 0.2196660674 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004607_040 0.2198088557 - - ADP,ATP carrier protein, putative [Ricinus communis]
14 Hb_012633_030 0.2222453843 - - hypothetical protein RCOM_0452240 [Ricinus communis]
15 Hb_000116_120 0.2227384544 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
16 Hb_172426_050 0.2242004083 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
17 Hb_002739_040 0.2243920682 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
18 Hb_002339_030 0.225110629 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_000165_200 0.2252590604 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_004958_020 0.2262583908 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]

Gene co-expression network

sample Hb_004346_010 Hb_004346_010 Hb_000186_290 Hb_000186_290 Hb_004346_010--Hb_000186_290 Hb_001916_030 Hb_001916_030 Hb_004346_010--Hb_001916_030 Hb_004545_070 Hb_004545_070 Hb_004346_010--Hb_004545_070 Hb_007885_020 Hb_007885_020 Hb_004346_010--Hb_007885_020 Hb_009545_030 Hb_009545_030 Hb_004346_010--Hb_009545_030 Hb_078081_010 Hb_078081_010 Hb_004346_010--Hb_078081_010 Hb_000186_290--Hb_078081_010 Hb_002739_040 Hb_002739_040 Hb_000186_290--Hb_002739_040 Hb_164926_040 Hb_164926_040 Hb_000186_290--Hb_164926_040 Hb_000116_120 Hb_000116_120 Hb_000186_290--Hb_000116_120 Hb_021409_140 Hb_021409_140 Hb_000186_290--Hb_021409_140 Hb_001675_040 Hb_001675_040 Hb_001916_030--Hb_001675_040 Hb_007134_030 Hb_007134_030 Hb_001916_030--Hb_007134_030 Hb_000645_250 Hb_000645_250 Hb_001916_030--Hb_000645_250 Hb_060152_010 Hb_060152_010 Hb_001916_030--Hb_060152_010 Hb_000373_060 Hb_000373_060 Hb_001916_030--Hb_000373_060 Hb_008695_150 Hb_008695_150 Hb_004545_070--Hb_008695_150 Hb_009767_050 Hb_009767_050 Hb_004545_070--Hb_009767_050 Hb_013726_010 Hb_013726_010 Hb_004545_070--Hb_013726_010 Hb_000165_200 Hb_000165_200 Hb_004545_070--Hb_000165_200 Hb_000032_250 Hb_000032_250 Hb_004545_070--Hb_000032_250 Hb_002072_040 Hb_002072_040 Hb_004545_070--Hb_002072_040 Hb_003688_210 Hb_003688_210 Hb_007885_020--Hb_003688_210 Hb_007885_020--Hb_004545_070 Hb_024758_030 Hb_024758_030 Hb_007885_020--Hb_024758_030 Hb_007885_020--Hb_009767_050 Hb_000668_050 Hb_000668_050 Hb_007885_020--Hb_000668_050 Hb_007416_290 Hb_007416_290 Hb_009545_030--Hb_007416_290 Hb_008143_040 Hb_008143_040 Hb_009545_030--Hb_008143_040 Hb_001159_170 Hb_001159_170 Hb_009545_030--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_009545_030--Hb_004324_030 Hb_009545_030--Hb_007134_030 Hb_007138_030 Hb_007138_030 Hb_009545_030--Hb_007138_030 Hb_078081_010--Hb_002739_040 Hb_001040_200 Hb_001040_200 Hb_078081_010--Hb_001040_200 Hb_000834_040 Hb_000834_040 Hb_078081_010--Hb_000834_040 Hb_002307_010 Hb_002307_010 Hb_078081_010--Hb_002307_010 Hb_001663_120 Hb_001663_120 Hb_078081_010--Hb_001663_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.042972 0.241139 1.80743 5.19556 0 0.355227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09713 0.31355 0.137265 5.4622 2.73418

CAGE analysis