Hb_003688_210

Information

Type -
Description -
Location Contig3688: 129036-132796
Sequence    

Annotation

kegg
ID rcu:RCOM_1469680
description replication factor A 1, rfa1, putative
nr
ID XP_002514651.1
description replication factor A 1, rfa1, putative [Ricinus communis]
swissprot
ID Q9SD82
description Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana GN=RPA1B PE=3 SV=1
trembl
ID B9RLN2
description Replication factor A 1, rfa1, putative OS=Ricinus communis GN=RCOM_1469680 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 70 kda dna-binding subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_210 0.0 - - replication factor A 1, rfa1, putative [Ricinus communis]
2 Hb_004545_070 0.1746599512 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
3 Hb_000032_460 0.187003857 - - calcineurin B, putative [Ricinus communis]
4 Hb_002339_030 0.1907136689 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_002072_040 0.1984158543 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
6 Hb_005168_020 0.1998491943 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
7 Hb_000668_050 0.2068973134 - - phosphoglycerate mutase, putative [Ricinus communis]
8 Hb_009767_050 0.2079666166 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
9 Hb_007885_020 0.2127821303 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
10 Hb_002248_010 0.2147600148 - - PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
11 Hb_002811_240 0.2193740832 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000032_250 0.2194749069 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
13 Hb_000680_070 0.2201986768 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
14 Hb_116190_010 0.2212850614 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
15 Hb_010334_050 0.2213027003 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005663_090 0.2234303849 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
17 Hb_013726_010 0.225537384 - - ATP binding protein, putative [Ricinus communis]
18 Hb_006499_020 0.2282440745 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
19 Hb_000000_200 0.2317501313 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
20 Hb_002301_110 0.233500132 - - PREDICTED: protein E6-like [Populus euphratica]

Gene co-expression network

sample Hb_003688_210 Hb_003688_210 Hb_004545_070 Hb_004545_070 Hb_003688_210--Hb_004545_070 Hb_000032_460 Hb_000032_460 Hb_003688_210--Hb_000032_460 Hb_002339_030 Hb_002339_030 Hb_003688_210--Hb_002339_030 Hb_002072_040 Hb_002072_040 Hb_003688_210--Hb_002072_040 Hb_005168_020 Hb_005168_020 Hb_003688_210--Hb_005168_020 Hb_000668_050 Hb_000668_050 Hb_003688_210--Hb_000668_050 Hb_008695_150 Hb_008695_150 Hb_004545_070--Hb_008695_150 Hb_009767_050 Hb_009767_050 Hb_004545_070--Hb_009767_050 Hb_013726_010 Hb_013726_010 Hb_004545_070--Hb_013726_010 Hb_000165_200 Hb_000165_200 Hb_004545_070--Hb_000165_200 Hb_000032_250 Hb_000032_250 Hb_004545_070--Hb_000032_250 Hb_004545_070--Hb_002072_040 Hb_004449_060 Hb_004449_060 Hb_000032_460--Hb_004449_060 Hb_010931_020 Hb_010931_020 Hb_000032_460--Hb_010931_020 Hb_002301_110 Hb_002301_110 Hb_000032_460--Hb_002301_110 Hb_003050_030 Hb_003050_030 Hb_000032_460--Hb_003050_030 Hb_000032_460--Hb_005168_020 Hb_002339_030--Hb_000165_200 Hb_001472_110 Hb_001472_110 Hb_002339_030--Hb_001472_110 Hb_002339_030--Hb_002301_110 Hb_002339_030--Hb_009767_050 Hb_164926_040 Hb_164926_040 Hb_002339_030--Hb_164926_040 Hb_002339_030--Hb_002072_040 Hb_002025_380 Hb_002025_380 Hb_002072_040--Hb_002025_380 Hb_002072_040--Hb_009767_050 Hb_002072_040--Hb_005168_020 Hb_006277_030 Hb_006277_030 Hb_002072_040--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002072_040--Hb_003189_010 Hb_005731_070 Hb_005731_070 Hb_002072_040--Hb_005731_070 Hb_005663_090 Hb_005663_090 Hb_005168_020--Hb_005663_090 Hb_000951_090 Hb_000951_090 Hb_005168_020--Hb_000951_090 Hb_000337_030 Hb_000337_030 Hb_005168_020--Hb_000337_030 Hb_000714_060 Hb_000714_060 Hb_005168_020--Hb_000714_060 Hb_000152_120 Hb_000152_120 Hb_005168_020--Hb_000152_120 Hb_001473_060 Hb_001473_060 Hb_000668_050--Hb_001473_060 Hb_007684_010 Hb_007684_010 Hb_000668_050--Hb_007684_010 Hb_000668_050--Hb_003189_010 Hb_000668_050--Hb_000714_060 Hb_003754_020 Hb_003754_020 Hb_000668_050--Hb_003754_020 Hb_000668_050--Hb_000951_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.166122 0.227914 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0263202 0 0.0391116 0.231013 0.130716

CAGE analysis