Hb_003050_030

Information

Type -
Description -
Location Contig3050: 21569-23697
Sequence    

Annotation

kegg
ID rcu:RCOM_0632630
description Calcyclin-binding protein, putative
nr
ID XP_002519682.1
description Calcyclin-binding protein, putative [Ricinus communis]
swissprot
ID Q6AYK6
description Calcyclin-binding protein OS=Rattus norvegicus GN=Cacybp PE=1 SV=1
trembl
ID B9S113
description Calcyclin-binding protein, putative OS=Ricinus communis GN=RCOM_0632630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_030 0.0 - - Calcyclin-binding protein, putative [Ricinus communis]
2 Hb_002301_110 0.2202412605 - - PREDICTED: protein E6-like [Populus euphratica]
3 Hb_000032_460 0.2446131548 - - calcineurin B, putative [Ricinus communis]
4 Hb_003878_220 0.2467211426 - - vacuolar protein sorting, putative [Ricinus communis]
5 Hb_001242_010 0.2519959996 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
6 Hb_001472_110 0.254520342 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
7 Hb_007975_050 0.2595297785 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
8 Hb_000820_050 0.2661668076 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
9 Hb_000820_060 0.2686989477 - - -
10 Hb_000165_200 0.270523057 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_010377_020 0.2717801171 - - -
12 Hb_000115_010 0.2744585204 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
13 Hb_001047_170 0.2756223754 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
14 Hb_002339_030 0.2823208112 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_010931_020 0.2838846768 - - Kunitz-type protease inhibitor KPI-F4 [Populus trichocarpa x Populus deltoides]
16 Hb_008790_040 0.2870915565 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
17 Hb_009732_040 0.2943966849 - - hypothetical protein POPTR_0006s04880g [Populus trichocarpa]
18 Hb_002284_180 0.2958159949 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
19 Hb_183086_070 0.2961852675 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
20 Hb_000143_020 0.2981592316 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]

Gene co-expression network

sample Hb_003050_030 Hb_003050_030 Hb_002301_110 Hb_002301_110 Hb_003050_030--Hb_002301_110 Hb_000032_460 Hb_000032_460 Hb_003050_030--Hb_000032_460 Hb_003878_220 Hb_003878_220 Hb_003050_030--Hb_003878_220 Hb_001242_010 Hb_001242_010 Hb_003050_030--Hb_001242_010 Hb_001472_110 Hb_001472_110 Hb_003050_030--Hb_001472_110 Hb_007975_050 Hb_007975_050 Hb_003050_030--Hb_007975_050 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_002301_110--Hb_001472_110 Hb_164926_040 Hb_164926_040 Hb_002301_110--Hb_164926_040 Hb_002072_040 Hb_002072_040 Hb_002301_110--Hb_002072_040 Hb_000165_200 Hb_000165_200 Hb_002301_110--Hb_000165_200 Hb_002339_030 Hb_002339_030 Hb_002301_110--Hb_002339_030 Hb_003688_210 Hb_003688_210 Hb_000032_460--Hb_003688_210 Hb_004449_060 Hb_004449_060 Hb_000032_460--Hb_004449_060 Hb_010931_020 Hb_010931_020 Hb_000032_460--Hb_010931_020 Hb_000032_460--Hb_002301_110 Hb_005168_020 Hb_005168_020 Hb_000032_460--Hb_005168_020 Hb_006153_180 Hb_006153_180 Hb_003878_220--Hb_006153_180 Hb_005976_010 Hb_005976_010 Hb_003878_220--Hb_005976_010 Hb_011861_090 Hb_011861_090 Hb_003878_220--Hb_011861_090 Hb_008790_040 Hb_008790_040 Hb_003878_220--Hb_008790_040 Hb_000077_360 Hb_000077_360 Hb_003878_220--Hb_000077_360 Hb_000115_250 Hb_000115_250 Hb_003878_220--Hb_000115_250 Hb_010377_020 Hb_010377_020 Hb_001242_010--Hb_010377_020 Hb_092995_020 Hb_092995_020 Hb_001242_010--Hb_092995_020 Hb_000110_390 Hb_000110_390 Hb_001242_010--Hb_000110_390 Hb_001268_320 Hb_001268_320 Hb_001242_010--Hb_001268_320 Hb_020712_050 Hb_020712_050 Hb_001242_010--Hb_020712_050 Hb_001472_110--Hb_164926_040 Hb_001472_110--Hb_000165_200 Hb_001472_110--Hb_002339_030 Hb_003562_030 Hb_003562_030 Hb_001472_110--Hb_003562_030 Hb_001472_110--Hb_002072_040 Hb_002027_030 Hb_002027_030 Hb_007975_050--Hb_002027_030 Hb_004162_060 Hb_004162_060 Hb_007975_050--Hb_004162_060 Hb_000086_290 Hb_000086_290 Hb_007975_050--Hb_000086_290 Hb_005539_260 Hb_005539_260 Hb_007975_050--Hb_005539_260 Hb_000554_030 Hb_000554_030 Hb_007975_050--Hb_000554_030 Hb_015778_030 Hb_015778_030 Hb_007975_050--Hb_015778_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.119468 0.796952 2.21747 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0801519 1.68053 2.26894 0.309891

CAGE analysis