Hb_010377_020

Information

Type -
Description -
Location Contig10377: 15267-15527
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010377_020 0.0 - - -
2 Hb_001268_320 0.1382458421 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
3 Hb_002092_030 0.1421928512 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
4 Hb_000110_390 0.1939420469 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
5 Hb_001242_010 0.2120249453 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
6 Hb_001894_180 0.2316971404 - - galactinol synthase [Manihot esculenta]
7 Hb_001329_030 0.2638884115 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003050_030 0.2717801171 - - Calcyclin-binding protein, putative [Ricinus communis]
9 Hb_000450_170 0.2725135335 - - conserved hypothetical protein [Ricinus communis]
10 Hb_168319_020 0.2734244956 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001493_160 0.2774939297 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
12 Hb_007975_050 0.2918761269 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
13 Hb_000975_200 0.2951558053 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
14 Hb_000320_030 0.2953122406 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
15 Hb_006153_180 0.2970599211 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
16 Hb_002284_180 0.3046777104 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
17 Hb_126711_010 0.3110400324 - - JAZ10 [Hevea brasiliensis]
18 Hb_010162_010 0.3115528367 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
19 Hb_003811_050 0.3125027302 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
20 Hb_002631_190 0.3126438107 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]

Gene co-expression network

sample Hb_010377_020 Hb_010377_020 Hb_001268_320 Hb_001268_320 Hb_010377_020--Hb_001268_320 Hb_002092_030 Hb_002092_030 Hb_010377_020--Hb_002092_030 Hb_000110_390 Hb_000110_390 Hb_010377_020--Hb_000110_390 Hb_001242_010 Hb_001242_010 Hb_010377_020--Hb_001242_010 Hb_001894_180 Hb_001894_180 Hb_010377_020--Hb_001894_180 Hb_001329_030 Hb_001329_030 Hb_010377_020--Hb_001329_030 Hb_001268_320--Hb_000110_390 Hb_001268_320--Hb_002092_030 Hb_001268_320--Hb_001242_010 Hb_001268_320--Hb_001894_180 Hb_001804_030 Hb_001804_030 Hb_001268_320--Hb_001804_030 Hb_004631_030 Hb_004631_030 Hb_002092_030--Hb_004631_030 Hb_002374_060 Hb_002374_060 Hb_002092_030--Hb_002374_060 Hb_000956_060 Hb_000956_060 Hb_002092_030--Hb_000956_060 Hb_010162_010 Hb_010162_010 Hb_002092_030--Hb_010162_010 Hb_000297_220 Hb_000297_220 Hb_002092_030--Hb_000297_220 Hb_168319_020 Hb_168319_020 Hb_000110_390--Hb_168319_020 Hb_000110_390--Hb_001242_010 Hb_000110_390--Hb_002092_030 Hb_000110_390--Hb_001894_180 Hb_092995_020 Hb_092995_020 Hb_001242_010--Hb_092995_020 Hb_003050_030 Hb_003050_030 Hb_001242_010--Hb_003050_030 Hb_020712_050 Hb_020712_050 Hb_001242_010--Hb_020712_050 Hb_001894_180--Hb_168319_020 Hb_000398_050 Hb_000398_050 Hb_001894_180--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_001894_180--Hb_000028_500 Hb_126711_010 Hb_126711_010 Hb_001894_180--Hb_126711_010 Hb_001894_180--Hb_001329_030 Hb_001329_030--Hb_126711_010 Hb_009010_040 Hb_009010_040 Hb_001329_030--Hb_009010_040 Hb_001329_030--Hb_168319_020 Hb_001638_180 Hb_001638_180 Hb_001329_030--Hb_001638_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.964078 1.12833 8.61206 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.84304 3.04831 0

CAGE analysis