Hb_001804_030

Information

Type -
Description -
Location Contig1804: 52909-55207
Sequence    

Annotation

kegg
ID rcu:RCOM_1158140
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002529875.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LZM4
description Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1
trembl
ID B9SV56
description Kinase, putative OS=Ricinus communis GN=RCOM_1158140 PE=3 SV=1
Gene Ontology
ID GO:0004672
description wall-associated receptor kinase-like 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17446: 54284-54687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001804_030 0.0 - - kinase, putative [Ricinus communis]
2 Hb_006538_160 0.2361685308 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001268_320 0.2531093766 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
4 Hb_034299_070 0.2562626337 - - actin binding protein, putative [Ricinus communis]
5 Hb_001946_370 0.2660670571 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000210_190 0.2840158416 - - PREDICTED: protein YLS9 [Jatropha curcas]
7 Hb_126711_010 0.2879210245 - - JAZ10 [Hevea brasiliensis]
8 Hb_001894_180 0.2946785811 - - galactinol synthase [Manihot esculenta]
9 Hb_000345_070 0.2969766809 rubber biosynthesis Gene Name: SRPP6 -
10 Hb_000676_280 0.2986577114 - - ATP binding protein, putative [Ricinus communis]
11 Hb_004453_070 0.2995335685 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
12 Hb_007810_090 0.3011627604 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
13 Hb_001329_020 0.3074487634 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
14 Hb_008864_030 0.3093379037 - - -
15 Hb_000302_100 0.3097114516 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
16 Hb_003464_070 0.310581561 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
17 Hb_000100_060 0.3118739871 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
18 Hb_000062_200 0.3128521663 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_010377_020 0.3143767521 - - -
20 Hb_000739_200 0.3154459542 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]

Gene co-expression network

sample Hb_001804_030 Hb_001804_030 Hb_006538_160 Hb_006538_160 Hb_001804_030--Hb_006538_160 Hb_001268_320 Hb_001268_320 Hb_001804_030--Hb_001268_320 Hb_034299_070 Hb_034299_070 Hb_001804_030--Hb_034299_070 Hb_001946_370 Hb_001946_370 Hb_001804_030--Hb_001946_370 Hb_000210_190 Hb_000210_190 Hb_001804_030--Hb_000210_190 Hb_126711_010 Hb_126711_010 Hb_001804_030--Hb_126711_010 Hb_000450_170 Hb_000450_170 Hb_006538_160--Hb_000450_170 Hb_000000_300 Hb_000000_300 Hb_006538_160--Hb_000000_300 Hb_002894_070 Hb_002894_070 Hb_006538_160--Hb_002894_070 Hb_001269_100 Hb_001269_100 Hb_006538_160--Hb_001269_100 Hb_005529_020 Hb_005529_020 Hb_006538_160--Hb_005529_020 Hb_003536_090 Hb_003536_090 Hb_006538_160--Hb_003536_090 Hb_010377_020 Hb_010377_020 Hb_001268_320--Hb_010377_020 Hb_000110_390 Hb_000110_390 Hb_001268_320--Hb_000110_390 Hb_002092_030 Hb_002092_030 Hb_001268_320--Hb_002092_030 Hb_001242_010 Hb_001242_010 Hb_001268_320--Hb_001242_010 Hb_001894_180 Hb_001894_180 Hb_001268_320--Hb_001894_180 Hb_131684_010 Hb_131684_010 Hb_034299_070--Hb_131684_010 Hb_004453_070 Hb_004453_070 Hb_034299_070--Hb_004453_070 Hb_000796_020 Hb_000796_020 Hb_034299_070--Hb_000796_020 Hb_104571_010 Hb_104571_010 Hb_034299_070--Hb_104571_010 Hb_002582_080 Hb_002582_080 Hb_034299_070--Hb_002582_080 Hb_004162_060 Hb_004162_060 Hb_034299_070--Hb_004162_060 Hb_052802_010 Hb_052802_010 Hb_001946_370--Hb_052802_010 Hb_007545_200 Hb_007545_200 Hb_001946_370--Hb_007545_200 Hb_148209_030 Hb_148209_030 Hb_001946_370--Hb_148209_030 Hb_020805_160 Hb_020805_160 Hb_001946_370--Hb_020805_160 Hb_004204_040 Hb_004204_040 Hb_001946_370--Hb_004204_040 Hb_000455_070 Hb_000455_070 Hb_000210_190--Hb_000455_070 Hb_000210_190--Hb_006538_160 Hb_000805_140 Hb_000805_140 Hb_000210_190--Hb_000805_140 Hb_017434_080 Hb_017434_080 Hb_000210_190--Hb_017434_080 Hb_000226_070 Hb_000226_070 Hb_000210_190--Hb_000226_070 Hb_010883_180 Hb_010883_180 Hb_000210_190--Hb_010883_180 Hb_123301_010 Hb_123301_010 Hb_126711_010--Hb_123301_010 Hb_001329_030 Hb_001329_030 Hb_126711_010--Hb_001329_030 Hb_001369_500 Hb_001369_500 Hb_126711_010--Hb_001369_500 Hb_000062_200 Hb_000062_200 Hb_126711_010--Hb_000062_200 Hb_000313_280 Hb_000313_280 Hb_126711_010--Hb_000313_280 Hb_000649_340 Hb_000649_340 Hb_126711_010--Hb_000649_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0624381 0.0481656 0.0321526 0.334807 0.00974249 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0372281 0.0705136 0.0666771 0

CAGE analysis