Hb_000210_190

Information

Type -
Description -
Location Contig210: 234575-235444
Sequence    

Annotation

kegg
ID rcu:RCOM_0437620
description hypothetical protein
nr
ID XP_012074425.1
description PREDICTED: protein YLS9 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T2S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0437620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_190 0.0 - - PREDICTED: protein YLS9 [Jatropha curcas]
2 Hb_000455_070 0.2102710516 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_006538_160 0.2182851888 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000805_140 0.2251149503 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
5 Hb_017434_080 0.2365194966 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000226_070 0.239802975 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
7 Hb_010883_180 0.2422593131 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
8 Hb_034299_070 0.2431640056 - - actin binding protein, putative [Ricinus communis]
9 Hb_000291_160 0.2459224875 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
10 Hb_000300_230 0.247225094 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
11 Hb_007311_050 0.2477257675 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000975_200 0.2477480555 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
13 Hb_005489_150 0.2518162804 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
14 Hb_005539_140 0.254082484 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
15 Hb_104571_010 0.2542203738 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
16 Hb_000302_100 0.2545100663 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
17 Hb_000320_350 0.2570958822 - - hypothetical protein RCOM_0904330 [Ricinus communis]
18 Hb_000413_080 0.2583745238 - - -
19 Hb_006153_180 0.2594967507 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
20 Hb_155541_020 0.2598090324 - - -

Gene co-expression network

sample Hb_000210_190 Hb_000210_190 Hb_000455_070 Hb_000455_070 Hb_000210_190--Hb_000455_070 Hb_006538_160 Hb_006538_160 Hb_000210_190--Hb_006538_160 Hb_000805_140 Hb_000805_140 Hb_000210_190--Hb_000805_140 Hb_017434_080 Hb_017434_080 Hb_000210_190--Hb_017434_080 Hb_000226_070 Hb_000226_070 Hb_000210_190--Hb_000226_070 Hb_010883_180 Hb_010883_180 Hb_000210_190--Hb_010883_180 Hb_003470_110 Hb_003470_110 Hb_000455_070--Hb_003470_110 Hb_005539_140 Hb_005539_140 Hb_000455_070--Hb_005539_140 Hb_030565_100 Hb_030565_100 Hb_000455_070--Hb_030565_100 Hb_002110_290 Hb_002110_290 Hb_000455_070--Hb_002110_290 Hb_000236_180 Hb_000236_180 Hb_000455_070--Hb_000236_180 Hb_001195_090 Hb_001195_090 Hb_000455_070--Hb_001195_090 Hb_000450_170 Hb_000450_170 Hb_006538_160--Hb_000450_170 Hb_000000_300 Hb_000000_300 Hb_006538_160--Hb_000000_300 Hb_002894_070 Hb_002894_070 Hb_006538_160--Hb_002894_070 Hb_001269_100 Hb_001269_100 Hb_006538_160--Hb_001269_100 Hb_005529_020 Hb_005529_020 Hb_006538_160--Hb_005529_020 Hb_003536_090 Hb_003536_090 Hb_006538_160--Hb_003536_090 Hb_000805_140--Hb_005539_140 Hb_000300_230 Hb_000300_230 Hb_000805_140--Hb_000300_230 Hb_030565_050 Hb_030565_050 Hb_000805_140--Hb_030565_050 Hb_000797_060 Hb_000797_060 Hb_000805_140--Hb_000797_060 Hb_007483_060 Hb_007483_060 Hb_000805_140--Hb_007483_060 Hb_000330_020 Hb_000330_020 Hb_000805_140--Hb_000330_020 Hb_004586_410 Hb_004586_410 Hb_017434_080--Hb_004586_410 Hb_017434_080--Hb_003536_090 Hb_007311_050 Hb_007311_050 Hb_017434_080--Hb_007311_050 Hb_000030_130 Hb_000030_130 Hb_017434_080--Hb_000030_130 Hb_005914_130 Hb_005914_130 Hb_017434_080--Hb_005914_130 Hb_008695_220 Hb_008695_220 Hb_017434_080--Hb_008695_220 Hb_010812_110 Hb_010812_110 Hb_000226_070--Hb_010812_110 Hb_001474_040 Hb_001474_040 Hb_000226_070--Hb_001474_040 Hb_000226_070--Hb_000300_230 Hb_002129_020 Hb_002129_020 Hb_000226_070--Hb_002129_020 Hb_000300_520 Hb_000300_520 Hb_000226_070--Hb_000300_520 Hb_002046_150 Hb_002046_150 Hb_000226_070--Hb_002046_150 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_010883_180--Hb_030565_100 Hb_000260_110 Hb_000260_110 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_000086_090 Hb_000086_090 Hb_010883_180--Hb_000086_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10532 0.225147 0.0616672 1.30851 0 0.0539073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0950988 0.173271 0.115164 0.192406

CAGE analysis