Hb_006538_160

Information

Type -
Description -
Location Contig6538: 134028-134342
Sequence    

Annotation

kegg
ID rcu:RCOM_0030040
description hypothetical protein
nr
ID XP_002531626.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LUA1
description CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana GN=CLE27 PE=2 SV=1
trembl
ID B9T057
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0030040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000450_170 0.1911234824 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000000_300 0.1992461806 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
4 Hb_002894_070 0.2017578122 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
5 Hb_001269_100 0.2038902609 - - plasma membrane ATPase 1, partial [Triticum aestivum]
6 Hb_005529_020 0.2066508764 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
7 Hb_003536_090 0.2112467975 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_020831_060 0.2144838892 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
9 Hb_000313_280 0.2168089558 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
10 Hb_000320_030 0.2171479651 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
11 Hb_000210_190 0.2182851888 - - PREDICTED: protein YLS9 [Jatropha curcas]
12 Hb_002164_010 0.2183879672 - - Stellacyanin, putative [Ricinus communis]
13 Hb_000042_350 0.2234143291 - - hypothetical protein JCGZ_00710 [Jatropha curcas]
14 Hb_000015_140 0.2235679127 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
15 Hb_179960_010 0.2249578752 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
16 Hb_008536_030 0.2259484422 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
17 Hb_004925_030 0.2280926046 - - EXORDIUM like 1 [Theobroma cacao]
18 Hb_002003_090 0.2291969569 - - PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
19 Hb_000975_200 0.2291974575 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
20 Hb_005784_060 0.2328114436 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]

Gene co-expression network

sample Hb_006538_160 Hb_006538_160 Hb_000450_170 Hb_000450_170 Hb_006538_160--Hb_000450_170 Hb_000000_300 Hb_000000_300 Hb_006538_160--Hb_000000_300 Hb_002894_070 Hb_002894_070 Hb_006538_160--Hb_002894_070 Hb_001269_100 Hb_001269_100 Hb_006538_160--Hb_001269_100 Hb_005529_020 Hb_005529_020 Hb_006538_160--Hb_005529_020 Hb_003536_090 Hb_003536_090 Hb_006538_160--Hb_003536_090 Hb_001195_670 Hb_001195_670 Hb_000450_170--Hb_001195_670 Hb_000320_030 Hb_000320_030 Hb_000450_170--Hb_000320_030 Hb_000313_280 Hb_000313_280 Hb_000450_170--Hb_000313_280 Hb_000015_140 Hb_000015_140 Hb_000450_170--Hb_000015_140 Hb_000450_170--Hb_005529_020 Hb_000450_170--Hb_002894_070 Hb_020831_060 Hb_020831_060 Hb_000000_300--Hb_020831_060 Hb_001300_030 Hb_001300_030 Hb_000000_300--Hb_001300_030 Hb_002768_040 Hb_002768_040 Hb_000000_300--Hb_002768_040 Hb_002627_010 Hb_002627_010 Hb_000000_300--Hb_002627_010 Hb_027405_010 Hb_027405_010 Hb_000000_300--Hb_027405_010 Hb_001322_010 Hb_001322_010 Hb_000000_300--Hb_001322_010 Hb_002894_070--Hb_000313_280 Hb_000740_080 Hb_000740_080 Hb_002894_070--Hb_000740_080 Hb_000616_100 Hb_000616_100 Hb_002894_070--Hb_000616_100 Hb_019299_020 Hb_019299_020 Hb_002894_070--Hb_019299_020 Hb_000563_140 Hb_000563_140 Hb_002894_070--Hb_000563_140 Hb_002894_070--Hb_020831_060 Hb_001269_100--Hb_020831_060 Hb_000236_210 Hb_000236_210 Hb_001269_100--Hb_000236_210 Hb_003893_060 Hb_003893_060 Hb_001269_100--Hb_003893_060 Hb_003464_100 Hb_003464_100 Hb_001269_100--Hb_003464_100 Hb_002164_010 Hb_002164_010 Hb_001269_100--Hb_002164_010 Hb_140627_040 Hb_140627_040 Hb_001269_100--Hb_140627_040 Hb_005529_020--Hb_001195_670 Hb_001186_110 Hb_001186_110 Hb_005529_020--Hb_001186_110 Hb_014720_100 Hb_014720_100 Hb_005529_020--Hb_014720_100 Hb_003001_050 Hb_003001_050 Hb_005529_020--Hb_003001_050 Hb_003536_090--Hb_002164_010 Hb_003536_090--Hb_000236_210 Hb_017434_080 Hb_017434_080 Hb_003536_090--Hb_017434_080 Hb_003536_090--Hb_020831_060 Hb_003536_090--Hb_001269_100 Hb_000302_100 Hb_000302_100 Hb_003536_090--Hb_000302_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.706282 0.641021 0.731143 7.67551 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.261273 0.380785 1.32098 0.414522

CAGE analysis